Merge branch 'fix_1091' into 'main'

speed up stitching processing

Closes #1091

See merge request tomotools/tomwer!690

tomwer/app/zstitching.py

@@ -21,6 +21,7 @@ from tomwer.gui.utils.splashscreen import getMainSplashScreen
 from tomwer.gui.stitching.stitching import ZStitchingWindow as _ZStitchingWindow
 from tomwer.gui.stitching import action as stitching_action
 from tomwer.gui.cluster.slurm import SlurmSettingsWidget
+from tomwer.core.scan.scanbase import TomwerScanBase
 
 logging.basicConfig(level=logging.WARNING)
 
@@ -296,7 +297,12 @@ def main(argv):
         action="store_true",
         default=False,
     )
-
+    parser.add_argument(
+        "--check-scans",
+        help="If True will check scans before adding them. This check scan validity (virtual dataset contains data...)",
+        action="store_true",
+        default=False,
+    )
     options = parser.parse_args(argv[1:])
 
     if options.use_opengl_plot:
@@ -342,6 +348,10 @@ def main(argv):
 
     tomo_objs, (has_scans, has_vols) = get_tomo_objs_instances(options.tomo_objs)
     for tomo_obj in tomo_objs:
+        if isinstance(tomo_obj, TomwerScanBase):
+            tomo_obj.set_check_behavior(
+                run_check=options.check_scans
+            )  # speed up processing
         window.addTomoObj(tomo_obj=tomo_obj)
     if has_scans and has_vols:
         _logger.warning(