[gui][imageStack] add some code to add the option to transpose the image.

But not activated since the given reference is the correct one.

tomwer/gui/stackplot.py

@@ -63,6 +63,9 @@ class _QImageStackPlot(qt.QWidget):
 
     def __init__(self, parent, sliderVertical=False):
         qt.QWidget.__init__(self, parent)
+        self._transpose = False
+        """If we want to transpose the image like imagj by default"""
+
         self.images = self.createStackImageInstance()
         layout = qt.QVBoxLayout()
         layout.setContentsMargins(0, 0, 0, 0)
@@ -144,6 +147,14 @@ class _QImageStackPlot(qt.QWidget):
         self._qspinbox.valueChanged.disconnect(self.showImage)
         self._qslider.valueChanged.disconnect(self.showImage)
 
+    def setTranspose(self, value):
+        if self._transpose != value:
+            self._transpose = value
+            img = self._plot.getActiveImage()
+            if img is not None:
+                data = numpy.transpose(img.getData())
+                img.setData(data)
+
     def _connectControls(self):
         self._qspinbox.valueChanged.connect(self.showImage)
         self._qslider.valueChanged.connect(self.showImage)
@@ -205,6 +216,8 @@ class _QImageStackPlot(qt.QWidget):
         if image is not None:
             if image.data is not None:
                 data = image.data
+                if self._transpose is True:
+                    data = numpy.transpose(data)
                 if self.axis_invert.isInverted() is True:
                     data = numpy.fliplr(data)
                 self._plot.addImage(data=data,

tomwer/gui/viewerqwidget.py

@@ -75,6 +75,7 @@ class ScanWidget(qt.QWidget):
         self.stackImageViewerTab.setLayout(qt.QVBoxLayout())
         self.stackImageViewerTab.layout().setContentsMargins(0, 0, 0, 0)
         self._stackImageViewerScan = stackplot._QImageFileStackPlot(self)
+        # self._stackImageViewerScan.setTranspose(True)
         self.stackImageViewerTab.addTab(self._stackImageViewerScan, 'Reconstruction')
 
         self._stackImageViewerRadio = stackplot._QImageFileStackPlot(self)