Rework edf2nx (add configuration file)
TODO
Requires tomoscan!77 (merged)
-
use a configuration class instead of options provided directory -
allow several values for rotation angle key (see #101 (closed) ) -
allow user to define unit of different field on the spec-edf as pixel size, sample / detector distance ... (see #100 (closed) ) -
let user provide a different file prefix than the folder name and provide information contained in .info (see #98 (closed)) I guess those modifications will impact tomoscan -
let user define more angles options (see #97 (closed)) -
improve handling of negative ScanRange (see #102 (closed) ). -
in order to let the user define a .info file and to avoid improving complexity of the code we will convert the .info contain into a dict and provide this one to the EDFTomoScan
class -
add an application to generate an edf2nx configuration file -
update tutorial for edf2nx
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try to deduce field of view for edf as well -
move default distance , x/y/x translation to centimeter instead of meter. Make more sense. -
move tomoscan dependency to 0.9.0a
extra
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edf2nx
: check input parameter is a folder. Otherwise raise an error - close #102 (closed)
- close #101 (closed)
- close #100 (closed)
- close #99 (closed)
- close #98 (closed)
- close #97 (closed)
Edited by payno
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changed milestone to %0.9
mentioned in merge request tomoscan!77 (merged)
added 1 commit
- 289d004d - io/edfconfig: start to create TomoEDFConfig with necessary keys
added 1 commit
- f6e9f072 - io/edfconfig: start to create TomoEDFConfig with necessary keys
added 1 commit
- 1ddf9609 - io/edfconfig: start to create TomoEDFConfig with necessary keys
added 1 commit
- 9698a548 - io/edfconfig: start to create TomoEDFConfig with necessary keys
added 6 commits
- 9c9e0e6a - io: move config test and file to the dedicated module
- f3003f58 - io: improve TomoEDFConfig
- 3d3e04de - move tomoscan dependency to 0.9.0
- d6f1ca51 - io: rename config/test/test_config.py config/test/test_hdf5_config.py
- 51c6d8e2 - io: config: first iteration on the TomoEDFConfig class
- 99e27858 - start to write
Toggle commit listadded 1 commit
- 22d698e0 - edf2nx: add a first vesion handling the angle_calculation options
added 1 commit
- b5cef611 - edf2nx: add a first vesion handling the angle_calculation options
added 1 commit
- 99621c3d - edf2nx: fix some typo and use `from_h5_to_nx` instead of `edf_to_nx` from the edf2nx application
added 1 commit
- dae253a4 - edf2nx: fix some typo and use `from_h5_to_nx` instead of `edf_to_nx` from the edf2nx application
marked the checklist item improve handling of negative ScanRange (see #102 (closed) ). as completed
marked the checklist item let user define more angles options (see #97 (closed)) as completed
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