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Draft: WIP: Implement processing of al NX entries in NX file in nabu.reconstruct.py

Jerome Lesaint requested to merge xrf_recons into master

This is a draft PR for the integration of fluo-tomo within the nabu framework. This is a first step of the integration, since the target integration would likely take the form of a new pipeline.

What needs to be done:

  • Convert fluo tomom data in NX files. See nxtomomill and tomoscan PRs. Had to fix sth in branch fluo_fix (see PR.
  • Make corrct/MLEM algo available. WIP...
  • Allow "all" HDF5 entries in NX file to be reconstructed by the fullfield pipeline.
  • Add unit tests.
  • Add an nabu-fluo app that takes shifts as input and reconstructs all fluo lines.

For tests:

  • Dataset boxK4 to be used for tests. Conversion to nx OK.
  • Compute shifts and prepare translations.txt file.
  • ...
Edited by Jerome Lesaint

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