Draft: WIP: Implement processing of al NX entries in NX file in nabu.reconstruct.py
This is a draft PR for the integration of fluo-tomo within the nabu framework. This is a first step of the integration, since the target integration would likely take the form of a new pipeline.
What needs to be done:
-
Convert fluo tomom data in NX files. See nxtomomill
andtomoscan
PRs. Had to fix sth in branchfluo_fix
(see PR. -
Make corrct/MLEM
algo available. WIP... -
Allow "all" HDF5 entries in NX file to be reconstructed by the fullfield pipeline. -
Add unit tests. -
Add an nabu-fluo
app that takes shifts as input and reconstructs all fluo lines.
For tests:
-
Dataset boxK4 to be used for tests. Conversion to nx OK. -
Compute shifts and prepare translations.txt
file. -
...
Edited by Jerome Lesaint