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Release 2020.2

Pierre Paleo requested to merge release_2020.2 into master

To do

To do for release:

  • Fix FlatField for n_flats > 2
  • Load a minimum number radios lines even if delta_z == 1 (mitigate #128 (closed))
  • Update doc
  • Publish doc and changelog
  • Tests (see below)
  • Deploy on pypi

Tests campaign

Datasets

Some datasets and their properties:

  • "Bamboo": HDF5, phase retrieval, double flatfield, automatic CoR
  • "Big": half tomography
  • 7a_C_: small, n_flats > 2, automatic CoR (not working)
  • HA-700_45.4_136keV_BM5_burrow_GSA-1-44_021_avg-2_: half tomo
  • /data/visitor/md1252/bm05/HR/tube02/HA-800_2.25um_FO-20.122ULZ-OLZ-OLP_008_: half tomo

Parameters

Parameters to try (and combine):

  • Binning (binning and binning_z)
  • Projections subsampling
  • Half tomography
  • Limited memory in cuda backend for now only available in library (not exposed in CLI)

Left for later ("September Milestone")

  • Integrate CCD median filter in the pipeline
  • rotation_axis_position (preproc.alignment.CenterOfRotation) for half-tomography
  • Generate darks and flats from Nexus dataset
  • Paganin margin (#122 (closed))
  • Computations distribution on the local machine
  • nabu CLI improvements (#127 (closed))
  • Ensure mode="preview" works
  • Computations distribution on the cluster
Edited by Pierre Paleo

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