Release 2020.2

To do

To do for release:

• Fix FlatField for n_flats > 2
• Load a minimum number radios lines even if delta_z == 1 (mitigate #128 (closed))
• Update doc
• Publish doc and changelog
• Tests (see below)
• Deploy on pypi

Tests campaign

Datasets

Some datasets and their properties:

• "Bamboo": HDF5, phase retrieval, double flatfield, automatic CoR
• "Big": half tomography
• 7a_C_: small, n_flats > 2, automatic CoR (not working)
• HA-700_45.4_136keV_BM5_burrow_GSA-1-44_021_avg-2_: half tomo
• /data/visitor/md1252/bm05/HR/tube02/HA-800_2.25um_FO-20.122ULZ-OLZ-OLP_008_: half tomo

Parameters

Parameters to try (and combine):

• Binning (binning and binning_z)
• Projections subsampling
• Half tomography
• Limited memory in cuda backend for now only available in library (not exposed in CLI)

Left for later ("September Milestone")

• Integrate CCD median filter in the pipeline
• rotation_axis_position (preproc.alignment.CenterOfRotation) for half-tomography
• Generate darks and flats from Nexus dataset
• Paganin margin (#122 (closed))
• Computations distribution on the local machine
• nabu CLI improvements (#127 (closed))
• Ensure mode="preview" works
• Computations distribution on the cluster