Commits · d39b998d20f0240875533c7b3686ff34b1c84f16 · graintracking / DCT

Aug 25, 2014
- initialize horizontal rotation axis offset in labgeo.detrefpos · cc45aab0
  Wolfgang Ludwig authored 10 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  cc45aab0
Apr 25, 2014
- Change xop default directory path · cfdea3e1
  Wolfgang Ludwig authored 10 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  cfdea3e1
- work with .edf files instead of database · dd71041f
  Wolfgang Ludwig authored 11 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  dd71041f
Mar 26, 2014
- gtShift: added no shift case · e3466f77
  preischig authored 11 years ago
  
  Signed-off-by: preischig <preischig@xnovotech.com>
  e3466f77
Dec 17, 2013
- General commenting and code formatting... · 51f3c326
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  51f3c326
Nov 07, 2013
- General commenting and indenting... · b09dd716
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  b09dd716
Jul 03, 2013
- Removed useless file. · 08f58237
  Yoann Guilhem authored 11 years ago
  
  Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>
  08f58237
Apr 28, 2013

Cleaned and optimized some utility functions (maths, imaging and cryst) · 3b97717a
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@937 4c865b51-4357-4376-afb4-474e03ccb993
```
3b97717a
Configuration stuff · 63fd0f24
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@909 4c865b51-4357-4376-afb4-474e03ccb993
```
63fd0f24
Bugfix in gtVectorOrientationColor · 561d6e40
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@908 4c865b51-4357-4376-afb4-474e03ccb993
```
561d6e40

Factorized the computation of the physical orientation color of a vector ->... · 28f12171

Yoann Guilhem authored 12 years ago and

Nicola Vigano committed 11 years ago

Factorized the computation of the physical orientation color of a vector -> gtVectorOrientationColor

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@905 4c865b51-4357-4376-afb4-474e03ccb993

28f12171

Speed up rgb2hsl by preallocating hsl array · 2d00ada4
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@858 4c865b51-4357-4376-afb4-474e03ccb993
```
2d00ada4
Commenting, formating and adding a variable for progress output · 4988327b
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@857 4c865b51-4357-4376-afb4-474e03ccb993
```
4988327b
Cleaning: removed the most useless function ever · 982080c4
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@856 4c865b51-4357-4376-afb4-474e03ccb993
```
982080c4
Cleanup some old and redundant functions · d8a73024
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@792 4c865b51-4357-4376-afb4-474e03ccb993
```
d8a73024

SoftThresholding: added fast soft-thresholding implementation · 701d64da

Nicola Vigano authored 12 years ago

Can't be pushed upstream yet, because it doesn't already handle the pathological cases.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@675 4c865b51-4357-4376-afb4-474e03ccb993

701d64da

Image/Volume mean value: using gtImgMeanValue by default since it can handle volumes and images · 30dd5406

Nicola Vigano authored 12 years ago

And it is faster that matlab's implementations (Speedup of 1.5x)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@667 4c865b51-4357-4376-afb4-474e03ccb993

30dd5406

SoftThresholding: finally fixed ill cases (no threshold or multiple threshold passed) · 98f689dc

Nicola Vigano authored 12 years ago

This generates a warning, in ill cases

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@641 4c865b51-4357-4376-afb4-474e03ccb993

98f689dc

SoftThresholding: fix for bad input threshold · 465cccc5

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@625 4c865b51-4357-4376-afb4-474e03ccb993

465cccc5

Difspots/Thresholding: added soft thresholding options and recycled EDF header · e364da18

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@589 4c865b51-4357-4376-afb4-474e03ccb993

e364da18

Assembling: made twin case faster · e0922668

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@585 4c865b51-4357-4376-afb4-474e03ccb993

e0922668

fixing a coordinate bug (detposcorner > pixels) in gtForwardSimulation_v2 -... · 28663a1f

Wolfgang Ludwig authored 12 years ago and

Nicola Vigano committed 11 years ago

fixing a coordinate bug (detposcorner > pixels) in gtForwardSimulation_v2  - load tables at beginning

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@554 4c865b51-4357-4376-afb4-474e03ccb993

28663a1f

gtForwardSimulate_v2: better performance in computation. · 3bea1924

Nicola Vigano authored 12 years ago

Now the biggest limiting factor is disk access

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@340 4c865b51-4357-4376-afb4-474e03ccb993

3bea1924

changes to gtForwardSimulation_v2.m - should work with new indexing output now · d6903982
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@329 4c865b51-4357-4376-afb4-474e03ccb993
```
d6903982

gtPlaceSubVolume: added yet another possible behavior · 8b9cde0d

Nicola Vigano authored 13 years ago

It's now possible to both assign the single values of the volume, or just an index per each voxels

Passing an index == 0 will select the "copy volume values" behavior

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@322 4c865b51-4357-4376-afb4-474e03ccb993

8b9cde0d

gtPlaceSubVolume: formatted to make it more readable · f8d0b842

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@319 4c865b51-4357-4376-afb4-474e03ccb993

f8d0b842

gtPlaceSubVolume: extended C function to assignment, and updated interface · 014197e0

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@318 4c865b51-4357-4376-afb4-474e03ccb993

014197e0

gtCrop: vectorized it a little bit, to make it more easy to change and mantain · 930079bf

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@316 4c865b51-4357-4376-afb4-474e03ccb993

930079bf

C/C++: grouped other functions · 0dcf6293

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@308 4c865b51-4357-4376-afb4-474e03ccb993

0dcf6293

C/C++ functions: centralized them, and moved all the volume addition classes... · 6e89b614

Nicola Vigano authored 13 years ago

C/C++ functions: centralized them, and moved all the volume addition classes together, to the same object

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@307 4c865b51-4357-4376-afb4-474e03ccb993

6e89b614

Dilation: added C function to process the voxels. brings execution time 16s -> 2.6s · 2e9ba5ef

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@306 4c865b51-4357-4376-afb4-474e03ccb993

2e9ba5ef

Added a new class for assembling multi-phase volumes, and enhanced C functions / gtPlaceSubVolume · 5eeccbdd

Nicola Vigano authored 13 years ago


Squashed commit of the following:

commit 0970bb93a0cd1f5dbe2d7afa0127b1fd456c425f
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Mar 14 20:27:36 2012 +0100

    GtAssembleVol3D: added the possibility to produce maps containing the conflicting regions

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit a2c5e52349639c6ecea2cb5565af20b24bf4645c
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Tue Mar 13 19:35:22 2012 +0100

    Fixed mistake in volume assembly

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit e347a02430a493ed8922729b8f1aa0c24d8f7bcd
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Tue Mar 13 17:53:14 2012 +0100

    GtAssembleVol3D: completed volume.mat generation

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit f22b83eb3867856842623f737e4887aeffb6cc0d
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Tue Mar 13 17:49:30 2012 +0100

    C functions to loop through ROIs in big volumes are now CPP functions, to deal with matlab types

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 892b5657636a29bfb4d8b99b381e34cbf8594158
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 12 21:40:03 2012 +0100

    GtAssembleVol3D: initial proper support for files/dirs new structure

    It should be able to write to the complete volume, but it fails right now to assemble the phases.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 99f73ade75d9e1c3f67f09ab60256524235241c3
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 12 16:02:27 2012 +0100

    GtAssembleVol3D: imported some twins stuff from function gtnew_assemble_vol4_3D

    The idea is to enhance in the future the assembling logic, in order to be able to merge automatically those grains which overlap by the majority of the volume and have the same orientation.
    The imported code is a nice idea, but needs to be refined, because can deal both with twins and overlapping similar grains.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 164fd07e92f0962d5b6669477a5f4e385c63d33a
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 12 12:22:07 2012 +0100

    Added missing statement for setting assembled volumes to zero, when interfering

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit d6ad590d0b7969f5b5ebd74cfccd849a10df56f2
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Mar 9 20:11:41 2012 +0100

    Fixed Phase volumes assembly, and enhanced gtPlaceSubVolume (it's now even faster)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 9c525d6be62bed674159b0d56691f77c4a6f0624
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Mar 9 18:44:08 2012 +0100

    Added initial Assembling Class.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@270 4c865b51-4357-4376-afb4-474e03ccb993

5eeccbdd

Preparing gtPlaceSubVolume, to be enhanced with C function, speed oriented · 21a9acbd

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@259 4c865b51-4357-4376-afb4-474e03ccb993

21a9acbd

Added gtImagesc and gtImshow which permute visualized image · f7582b06

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@255 4c865b51-4357-4376-afb4-474e03ccb993

f7582b06

Cleanup of 5_reconstruction and 4_grains · cbe8f350

Nicola Vigano authored 13 years ago

Wolfgang

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@243 4c865b51-4357-4376-afb4-474e03ccb993

cbe8f350

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@207 4c865b51-4357-4376-afb4-474e03ccb993 · d0a6785d
Wolfgang Ludwig authored 13 years ago and Nicola Vigano committed 11 years ago

d0a6785d

Fixed Drift Correction to be on a per image basis · b7b96147

Nicola Vigano authored 13 years ago

This was creating conflicts on OAR, because multiple jobs tried to write to the same parameters file

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@186 4c865b51-4357-4376-afb4-474e03ccb993

b7b96147

Imported median filter from PyMca so to not use a Imaging toolbox license. · f3063a78

Nicola Vigano authored 13 years ago


To use it, you need to compile the mex file:
python26 zUtil_Python/compile_mex_functions.py -c "gtImgMedianFilter.c"

Interesting enough, the new filter is even faster by a 50% than the Imaging toolbox version.

There are two versions:
 - gtImgMedianFilter: which is the fast version, without input checking
 - gtImgMedianFilter2: which is the version with input checking (but not significantly slower)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@169 4c865b51-4357-4376-afb4-474e03ccb993

f3063a78

Removing executing permission to all .m files · 8c03cd26

Nicola Vigano authored 13 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@154 4c865b51-4357-4376-afb4-474e03ccb993

8c03cd26

Clean gtCreateAbsLive, and added functions to compute the mean value of a matrix · f60de46c

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@151 4c865b51-4357-4376-afb4-474e03ccb993

f60de46c