correcting errors in binning interlaced scans
small fix to GtAssembleVol3D

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@ens-cachan.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtStatus : added check if the new segmentation has been run (method is 'doublethr_new' in this case)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtStatus : added flag "completeCheck" to check single types of images even the preprocessing status seems ok; better commented and separated the single sections; reviewed the part for check fsim and check the reconstruction.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtStatus        : used the same criteria to check images

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtLastFileName : commented header and added freedom for the extension given by an extra argument. Default is 'mat'.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtCopyDataForTest : commented header and added option to copy data to a new folder, without 0_rawdata/Orig structure. To use this, just set alreadySetup flag to false.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtReadTextFile : generalised use of reading text files... Now we can pass inputs as varargin to specify options for textscan

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 11 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 11 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

avoid color in git command which was leading to unexpected behavior

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@966 4c865b51-4357-4376-afb4-474e03ccb993

Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago

Calculation of reflections : update code to get list of permutations and rotations for each crystal system; create function to read text file output from python

-  Five text files are created running gtCrystCalculateReflections:
      + [filename][type].txt with the list of reflections with the specific unit cell, lambda, sin(theta)/lambda limits
      + rot_[crystal_system].txt with the set of unitary rotation matrices corresponding to the indistinguasible lattice permutations
      + perm_[crystal_system].txt with the set of indistinguasible lattice permutations
      + sg_rot_[crystal_system].txt with rotations (complete list using symmetry operators)
      + sg_trans_[crystal_system].txt with transition values from symmetry operators

-  Renamed zUtilCryst/gtCrystGetReflections.m into zUtil_Help/gtReadTextFile.m

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@953 4c865b51-4357-4376-afb4-474e03ccb993

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@949 4c865b51-4357-4376-afb4-474e03ccb993

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@927 4c865b51-4357-4376-afb4-474e03ccb993

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@922 4c865b51-4357-4376-afb4-474e03ccb993

Stefan Schmiederer authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@902 4c865b51-4357-4376-afb4-474e03ccb993

Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@836 4c865b51-4357-4376-afb4-474e03ccb993

Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@806 4c865b51-4357-4376-afb4-474e03ccb993

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

- get rid of hard-coded matlabDCT pathes
- add a check on DCT_DIR and cwd in python scripts

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@784 4c865b51-4357-4376-afb4-474e03ccb993