update gtStatus to work with the new configuration, change the reconstruction check algo for faster one... not tested in all the different situation, but should globally work

correcting errors in binning interlaced scans
small fix to GtAssembleVol3D

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@ens-cachan.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtStatus : added check if the new segmentation has been run (method is 'doublethr_new' in this case)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtStatus : added flag "completeCheck" to check single types of images even the preprocessing status seems ok; better commented and separated the single sections; reviewed the part for check fsim and check the reconstruction.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtStatus        : used the same criteria to check images

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtLastFileName : commented header and added freedom for the extension given by an extra argument. Default is 'mat'.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtCopyDataForTest : commented header and added option to copy data to a new folder, without 0_rawdata/Orig structure. To use this, just set alreadySetup flag to false.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtReadTextFile : generalised use of reading text files... Now we can pass inputs as varargin to specify options for textscan

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 11 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 11 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

avoid color in git command which was leading to unexpected behavior

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@966 4c865b51-4357-4376-afb4-474e03ccb993

Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago

Calculation of reflections : update code to get list of permutations and rotations for each crystal system; create function to read text file output from python

-  Five text files are created running gtCrystCalculateReflections:
      + [filename][type].txt with the list of reflections with the specific unit cell, lambda, sin(theta)/lambda limits
      + rot_[crystal_system].txt with the set of unitary rotation matrices corresponding to the indistinguasible lattice permutations
      + perm_[crystal_system].txt with the set of indistinguasible lattice permutations
      + sg_rot_[crystal_system].txt with rotations (complete list using symmetry operators)
      + sg_trans_[crystal_system].txt with transition values from symmetry operators

-  Renamed zUtilCryst/gtCrystGetReflections.m into zUtil_Help/gtReadTextFile.m

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@953 4c865b51-4357-4376-afb4-474e03ccb993

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@949 4c865b51-4357-4376-afb4-474e03ccb993

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@927 4c865b51-4357-4376-afb4-474e03ccb993

Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@922 4c865b51-4357-4376-afb4-474e03ccb993

Stefan Schmiederer authored 12 years ago and Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@902 4c865b51-4357-4376-afb4-474e03ccb993

Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@836 4c865b51-4357-4376-afb4-474e03ccb993

Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@806 4c865b51-4357-4376-afb4-474e03ccb993