Commits · acdba3fa7467f99e4b90f5f59d40e7f1dcf4be74 · graintracking / DCT

Jun 26, 2013
- OAR/Python: disable monitoring if oar modules cannot be imported properly · acdba3fa
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  acdba3fa
Jun 25, 2013
- Python/OAR: Added email notification upon oar array termination feature · dc088233
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  dc088233
- Python: reformatted to be more PEP compliant · 860f436e
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  860f436e
- Notification/Python: added initial email notification implementation · 049027e3
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  049027e3
- OAR/Python: added initial OAR API python modules and some utilities · cc19bee6
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  cc19bee6
May 02, 2013
- Compiled matlab functions / Batching: introduced XML based record, and faster matlab invocation · cd777655
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  cd777655
Apr 28, 2013

Python: added verbosity levels, added fresh mexopts option and fixed some bugs · b183ae48
Nicola Vigano authored 11 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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b183ae48
Python: changed precedence to the paths added in matlab invokation · cb2d5a8a
Nicola Vigano authored 11 years ago
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this fixes some library problems on some machines

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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cb2d5a8a
Another fix for compilation of matlab functions. · 0b0cbd87
Yoann Guilhem authored 11 years ago and Nicola Vigano committed 11 years ago
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Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>
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0b0cbd87
Python: Fixed compilation issue when asking specific matlab functions to be compiled · 9856cb94
Nicola Vigano authored 11 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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9856cb94
Add a check for compiled functions at DCT matlab startup · 5ff3060a
Yoann Guilhem authored 11 years ago and Nicola Vigano committed 11 years ago
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Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>
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5ff3060a
Optimized search of submit functions in compile_matlab python script · 920219e7
Yoann Guilhem authored 11 years ago and Nicola Vigano committed 11 years ago
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Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>
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920219e7
Git: setting --rebase as default option for git pull · 1bc8032e
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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1bc8032e
Python: added publishing function for the dct-installer.zip · a3dc8372
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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a3dc8372
Add a function to call python with the proper command · 6814c728
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
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Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>
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6814c728
Python/conf: added possibility to specify machine specific paths · aabec491
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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aabec491
Python/conf: Fixed useless extra param · c7c200af
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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c7c200af
Python/compile_matlab: fixed help · 798271a0
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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798271a0
Python/install: fixed CentOS5 installations · fb5173d8
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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fb5173d8
Python/matlab invocation: shared code for calling matlab · a24bee9b
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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a24bee9b
Python/conf: fixed libraries loading and preloading (for newer machines) · e84318c1
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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e84318c1
Python/id19's scripts: added trigger in conf.xml to activate id19's functions or not · a8e8f1e5
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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a8e8f1e5
Python/bundle: added possibility to specify target file · 09e3d762
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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09e3d762
Python/launch/setup: misc fixes and help additions · 7fc81e8f
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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7fc81e8f
Python/bundle: put files in a subdirectory · 456857d6
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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456857d6
Compilation: changed bin directory to just bin/compiled/ · 63d52314
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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63d52314
Python/setup: fixed name guessing · a97a5e50
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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a97a5e50
Python/setup: better error handling of git config · cd2bf475
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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cd2bf475
Python/setup: Fixed matlab mexopts generation · 245d84c1
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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245d84c1
Python/setup: fixed gcc version determination · f01e15b8
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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f01e15b8
Python module: added new auto-configuration utilities for developers · 921e313f
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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921e313f
Added runtime fetch of available branches on the git repo · 4bd55dce
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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4bd55dce
Added undocumented generation of install scripts bundles · 47093678
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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47093678
New wave of launching and managing DCT: initial commit · b0c6dc96
Nicola Vigano authored 12 years ago
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Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
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b0c6dc96
gtCrystCalculateSymmetryOperators : changed output format for this function · c9423b1f
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
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Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@956 4c865b51-4357-4376-afb4-474e03ccb993
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c9423b1f

Updating and improving the generation of the lists with symmetry operators and... · 3c268494

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

Updating and improving the generation of the lists with symmetry operators and reflections for each space group.

Changes:
- gtCrystCalculateReflections : removed calculation of symmetry operators, done now in gtCrystCalculateSymmetryOperators; the function is needed to get the reflection list only, using script "reflections_list.py
- gtCrystCalculateSymmetryOperators : calculates symmetry operators given a space group (using python script "symmetry_operators_list.py"

Renamed create_reflections_list.py into reflections_list.py

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@955 4c865b51-4357-4376-afb4-474e03ccb993

3c268494

Calculation of reflections : update code to get list of permutations and... · e9bd6b11

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

Calculation of reflections : update code to get list of permutations and rotations for each crystal system; create function to read text file output from python

-  Five text files are created running gtCrystCalculateReflections:
      + [filename][type].txt with the list of reflections with the specific unit cell, lambda, sin(theta)/lambda limits
      + rot_[crystal_system].txt with the set of unitary rotation matrices corresponding to the indistinguasible lattice permutations
      + perm_[crystal_system].txt with the set of indistinguasible lattice permutations
      + sg_rot_[crystal_system].txt with rotations (complete list using symmetry operators)
      + sg_trans_[crystal_system].txt with transition values from symmetry operators

-  Renamed zUtilCryst/gtCrystGetReflections.m into zUtil_Help/gtReadTextFile.m

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@953 4c865b51-4357-4376-afb4-474e03ccb993

e9bd6b11

Reflections list calculation for any spacegroup : lattice parameters,... · 25b9f7eb

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

Reflections list calculation for any spacegroup : lattice parameters, spacegroup and maximum sin(theta)/lambda are needed.

Content of the commit:

zUtil_Cryst/gtCrystCalculateReflections :
function to generate the reflection list for any spacegroup (using fable package xfab) and convert it from text file to matlab matrix
zUtil_Cryst/gtCrystGetReflections :
function to read output from gtCrystCalculateReflections and convert in matlab matrices
zUtil_Python/create_reflections_list.py :
python script for the calculation using xfab package

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@943 4c865b51-4357-4376-afb4-474e03ccb993

25b9f7eb

Cleaning: remove executable bit on sources, text and pictures files · 3ce4e41b
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
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git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@922 4c865b51-4357-4376-afb4-474e03ccb993
```
3ce4e41b

Python/mex compile: added -h option and colored error reporting · ebab400f

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@839 4c865b51-4357-4376-afb4-474e03ccb993

ebab400f