Commits · 8b947460a4c17f01d504c387a1a557b2285cd47b · graintracking / DCT

Dec 01, 2016
- Reconstruction: added reconstruction options to output · 8b947460
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  8b947460
- Reconstruction: allow to return the reconstruction structures as output if requested · 1f95c8d5
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  1f95c8d5
Nov 30, 2016
- Thresholding: let's disable the std-dev weighting by default · 44334709
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  44334709
Nov 09, 2016
- Re-introduced Wolfgang's last feature for launching clusters on OAR (to-be-tested) · 1f17e496
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  1f17e496
- Grain segmentation: added logic that uses the reconstruction std-dev to reduce artifacts · 969bb255
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  969bb255
- 6D-reconstruction: let's keep the more conservative l2 norm for the detector term · fe1879c0
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  fe1879c0
- Orientation-Sampling: reduced sampling strategies to two types: numpoints and... · 6463aca9
  Nicola Vigano authored 8 years ago
  
  Orientation-Sampling: reduced sampling strategies to two types: numpoints and resolution, each with and without ODF estimation Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  6463aca9
- 6D-Reconstructions: added a new detector data-fidelity term (KL), and two new... · 91155818
  Nicola Vigano authored 8 years ago
  
  6D-Reconstructions: added a new detector data-fidelity term (KL), and two new TV-norms (Isotropic TV and Nuclear TV) Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  91155818
- 6D-Reconstruction: added code path to specify ospace-resolution on single grain reconstructions · 5b80956a
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  5b80956a
- 6D-Reconstructions: merged gtReconstructGrainExtended =>... · 6e09b613
  Nicola Vigano authored 8 years ago
  
  6D-Reconstructions: merged gtReconstructGrainExtended => gtReconstructGrainOrientation, gtReconstructGrainTwinCluster => gtReconstructGrainCluster Code duplication reduced, and other small benefits Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  6e09b613
- 6D-Reconstructions: more updates to the reconstruction routines · 0eeca473
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  0eeca473
- 6D-Reconstructions: added time accounting for IO and post-processing steps · 43312ebf
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  43312ebf
- 6D-reconstruction: updated to same volume_downscaling procedure as the other... · dcb96d10
  Nicola Vigano authored 8 years ago
  
  6D-reconstruction: updated to same volume_downscaling procedure as the other reconstruction routines Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  dcb96d10
- Revert "Enable reconstruction of twinclusters on OAR, using gtSetupReconstruction" · 3979e771
  Nicola Vigano authored 8 years ago
  
  This reverts commit a3e9f983.
  3979e771
- Revert "add missing file for cluster reconstruction on OAR" · fabd60e3
  Nicola Vigano authored 8 years ago
  
  This reverts commit 4751df8e.
  fabd60e3
- Revert "small fix in case of grain_ids are provided as input" · f22b4973
  Nicola Vigano authored 8 years ago
  
  This reverts commit 44ee3120.
  f22b4973
Oct 12, 2016
- small fix in case of grain_ids are provided as input · 44ee3120
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  44ee3120
- add missing file for cluster reconstruction on OAR · 4751df8e
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  4751df8e
- Enable reconstruction of twinclusters on OAR, using gtSetupReconstruction · a3e9f983
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  a3e9f983
Oct 10, 2016

6D-Twin-reconstruction: allow reconstructing data-structure without loading it from disk · 084b3924

Nicola Vigano authored 8 years ago


This allows testing/debugging without waiting for the file-system to slowly do its job..

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

084b3924

Oct 06, 2016
- small fix in initialization of zero-array (does not accept logicals) · c89b3e4c
  Wolfgang Ludwig authored 8 years ago
  
  add possibility to look for SEG, ODF6D, VOL#D fields in gtFindFailedGrains Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  c89b3e4c
- remove automatic thresholding when launched as as a OAR job: it · 63aff727
  Wolfgang Ludwig authored 8 years ago
  
  causes systematic crashes of the OAR jobs.. Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  63aff727
- minor fixes · c3845b5e
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  c3845b5e
Oct 04, 2016
- Twin reconstruction: added possibility to manually select the orientation space limits · e02f8e89
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  e02f8e89
Jun 13, 2016
- Random fixes from segmentation and assembling · 1bcd0dd3
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  1bcd0dd3
- Added some more bits from Lorenzo's work: the active volume generation · 7921e202
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  7921e202
Jun 08, 2016
- 6D-Reconstruction/Twins: let parent and twins use different num-interp · 742026ac
  Nicola Vigano authored 8 years ago
  
  But we would still force parent's num-interp for shared blobs Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  742026ac
- 6D-reconstruction/Twins: added reconstruction resolution tuning · 23cefd06
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  23cefd06
Jun 07, 2016

Silenced some warning · 6b66f80d
Nicola Vigano authored 8 years ago
```
Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
```
6b66f80d

6D-Reconstruction/Twin: added possibility an even sampling of the grid and use... · b1be5cd1

Nicola Vigano authored 8 years ago

6D-Reconstruction/Twin: added possibility an even sampling of the grid and use the previously computed orientation bboxes

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

b1be5cd1

May 27, 2016
- 6D-rec: updated default lambda parameter · f3196084
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  f3196084
- 6D-reconstruction: cleaned old code even more · d116f730
  Nicola Vigano authored 8 years ago and Nicola Vigano committed 8 years ago
  
  Signed-off-by: Nicola Vigano <vigano@yoda.esrf.fr>
  d116f730
May 25, 2016

small fix to previous coommit and simpple helper function for detecting... · badc95c1

Wolfgang Ludwig authored 8 years ago

small fix to previous coommit and simpple helper function for detecting missing 6D reconstructions...

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

badc95c1

Enable distribution of grain reconstructions over OAR cluster, · 0b1f1e7c
Wolfgang Ludwig authored 8 years ago
```
in the case a list of grainids is provided.

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
```
0b1f1e7c

May 19, 2016
- remove some leftovers (+) from code merging · 1b920077
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  1b920077
May 17, 2016

Add the option sample_shif during the 'assemble volume' step, to shift the... · c04ac62f

Christophe Le Bourlot authored 8 years ago

Add the option sample_shif during the 'assemble volume' step, to shift the sample of the given vector in order to have it within the field of view

c04ac62f

May 13, 2016
- small fixes to re-enable parallel Thresholding via OAR and gtChangeThreshold3D · 53bd7a29
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  53bd7a29
May 10, 2016
- 6D-reconstruction: trivial update · 07137c89
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <vigano@yoda.esrf.fr>
  07137c89
May 06, 2016
- C++/mex files: large cleanup · 86199636
  Nicola Viganò authored 8 years ago
  
  Signed-off-by: Nicola Viganò <ben.vighy@gmail.com>
  86199636
Apr 29, 2016
- Volume thresholding: fixed visual bug that would delay the update of the threshold in the bar · b4f7af77
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  b4f7af77