Commits · 2ceb09df5bdc404adfa50c2f32b5b22c0db439df · graintracking / DCT

Apr 28, 2013

Yoann Guilhem authored 12 years ago and

Nicola Vigano committed 11 years ago

avoid color in git command which was leading to unexpected behavior

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

2ceb09df

Add a function to call python with the proper command · 6814c728
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>
```
6814c728
Update gtVersion to GIT · 60f964ef
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>
```
60f964ef
Cleaning test · 03dd9f16
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@966 4c865b51-4357-4376-afb4-474e03ccb993
```
03dd9f16

Calculation of reflections : update code to get list of permutations and... · e9bd6b11

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

Calculation of reflections : update code to get list of permutations and rotations for each crystal system; create function to read text file output from python

-  Five text files are created running gtCrystCalculateReflections:
      + [filename][type].txt with the list of reflections with the specific unit cell, lambda, sin(theta)/lambda limits
      + rot_[crystal_system].txt with the set of unitary rotation matrices corresponding to the indistinguasible lattice permutations
      + perm_[crystal_system].txt with the set of indistinguasible lattice permutations
      + sg_rot_[crystal_system].txt with rotations (complete list using symmetry operators)
      + sg_trans_[crystal_system].txt with transition values from symmetry operators

-  Renamed zUtilCryst/gtCrystGetReflections.m into zUtil_Help/gtReadTextFile.m

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@953 4c865b51-4357-4376-afb4-474e03ccb993

e9bd6b11

Update gtVersion · d0c0cc67
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@949 4c865b51-4357-4376-afb4-474e03ccb993
```
d0c0cc67
Bugfix for gtVersion (was wrongly using DCT_DIR env variable instead of global GT_MATLAB_HOME) · f0b58956
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@927 4c865b51-4357-4376-afb4-474e03ccb993
```
f0b58956
Cleaning: remove executable bit on sources, text and pictures files · 3ce4e41b
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@922 4c865b51-4357-4376-afb4-474e03ccb993
```
3ce4e41b
Adding Segmentation and Matching chapters. · 39a6299c
Stefan Schmiederer authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@902 4c865b51-4357-4376-afb4-474e03ccb993
```
39a6299c

gtStatus : add feedback from rec, cleaning a bit... · a29fd888

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@836 4c865b51-4357-4376-afb4-474e03ccb993

a29fd888

gtStatus : fix bug while checking reconstruction and Fsim · 894c5c22

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@806 4c865b51-4357-4376-afb4-474e03ccb993

894c5c22

Bugfix: · a942aefd

Yoann Guilhem authored 12 years ago and

Nicola Vigano committed 11 years ago

- get rid of hard-coded matlabDCT pathes
- add a check on DCT_DIR and cwd in python scripts

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@784 4c865b51-4357-4376-afb4-474e03ccb993

a942aefd

gtStatus : fix error with warnings · 2bd3fe77

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@770 4c865b51-4357-4376-afb4-474e03ccb993

2bd3fe77

Bugfix in gtCreateDoc · 46b5b739
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@704 4c865b51-4357-4376-afb4-474e03ccb993
```
46b5b739
gtCreateDoc can now focus on any specific source directories and/or files · 07c9d12f
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@700 4c865b51-4357-4376-afb4-474e03ccb993
```
07c9d12f

gtResetAnalysis : useful function to reset an analysis directory to the raw... · 874eca80

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

gtResetAnalysis : useful function to reset an analysis directory to the raw data, ready to be re-analyzed!

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@698 4c865b51-4357-4376-afb4-474e03ccb993

874eca80

Old and general formatting in the code... · c3fd9eb6

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@695 4c865b51-4357-4376-afb4-474e03ccb993

c3fd9eb6

New macro to output matlabDCT version and svn revision number · 282ce5da
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@693 4c865b51-4357-4376-afb4-474e03ccb993
```
282ce5da
Update gtCreateDoc function and bugfix for m2html · 5439a0ce
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@690 4c865b51-4357-4376-afb4-474e03ccb993
```
5439a0ce

Compilation/OAR: yet another fix for global variables · bd827fde

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@624 4c865b51-4357-4376-afb4-474e03ccb993

bd827fde

OAR/Globals: second patch, autogenerated, that loads the workspace · fc0cb845

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@617 4c865b51-4357-4376-afb4-474e03ccb993

fc0cb845

Global variables: securing global variables use, and added explanation · 2e9fffc2

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@607 4c865b51-4357-4376-afb4-474e03ccb993

2e9fffc2

More... better oar reading · 33e9db79
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@593 4c865b51-4357-4376-afb4-474e03ccb993
```
33e9db79
and more... · a5000a8a
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@592 4c865b51-4357-4376-afb4-474e03ccb993
```
a5000a8a
Further tweaks · 190ad571
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@591 4c865b51-4357-4376-afb4-474e03ccb993
```
190ad571
Added limited oar check to gtStatus · 73ddaab1
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@590 4c865b51-4357-4376-afb4-474e03ccb993
```
73ddaab1
function to check analysis progress, twin assembly added to GtAssembleVol3D · f64099de
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@564 4c865b51-4357-4376-afb4-474e03ccb993
```
f64099de

Changes in zUtil_Parameters, zUtil_Help, gtSetup_Utils and zUtil_DB · 19f553df

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

zUtil_Parameters : modified print_structure to print structures which contain other structures and fix bug in update_parameters
zUtil_Help : update and fix gtCopyDataForTest
gtSetup_Utils : create gtUpdateXmlFile to have more info from header of raw images and save info into the parameters file in gtSetup
zUtil_DB : create gtDBCopyAllTables to copy all the database tables from a dataset

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@464 4c865b51-4357-4376-afb4-474e03ccb993

19f553df

gtCopyDataForTest : changed function from · 4412cc58

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

       gtCopyDataForTest(origdir,origname,newname,newdir)
                    to
       gtCopyDataForTest(old_pattern,new_pattern,workdir,newdir)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@428 4c865b51-4357-4376-afb4-474e03ccb993

4412cc58

gtLastFileName : changed directory from 3_pairmatching to zUtil_Help · 7024dfb3
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@423 4c865b51-4357-4376-afb4-474e03ccb993
```
7024dfb3

Removing executing permission to all .m files · 8c03cd26

Nicola Vigano authored 13 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@154 4c865b51-4357-4376-afb4-474e03ccb993

8c03cd26

Attempt to make matlabDCT independent of a fixed path. · a7dfe8d2

Nicola Vigano authored 13 years ago

It should make it possible to run it from other paths.
Moreover I added some more portability, using fullfile.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@125 4c865b51-4357-4376-afb4-474e03ccb993

a7dfe8d2

Debugging, testing and renaming images to be tested - by LNervo · 3b7c5739
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@107 4c865b51-4357-4376-afb4-474e03ccb993
```
3b7c5739
Code clean-up, included crystallography, massive upgrade - by LNervo · 8a8a1fdb
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@105 4c865b51-4357-4376-afb4-474e03ccb993
```
8a8a1fdb
Code clean-up, included crystallography, massive upgrade - by LNervo · 678b247d
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@102 4c865b51-4357-4376-afb4-474e03ccb993
```
678b247d
Cleaning functions, adding user friendly codes, last updates Laura · 71ccfa63
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@94 4c865b51-4357-4376-afb4-474e03ccb993
```
71ccfa63
Cleaning functions, adding user friendly codes, last updates Laura · c49a0961
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@93 4c865b51-4357-4376-afb4-474e03ccb993
```
c49a0961

Initial SVN structure · f4089a69

Andrew King authored 16 years ago and

Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@6 4c865b51-4357-4376-afb4-474e03ccb993

another initial commit...

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@13 4c865b51-4357-4376-afb4-474e03ccb993

f4089a69