Commits · 1fbcb871342f491068056742d1ddf29ce2a70d45 · graintracking / DCT

Jan 09, 2017
- Improved 3DTV absorption volume reconstruction, with KL data divergence term,... · 1fbcb871
  Nicola Vigano authored 8 years ago
  
  Improved 3DTV absorption volume reconstruction, with KL data divergence term, and l12 norm in the TV term Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  1fbcb871
- Added beam attenuation computation, due to absorption / fixed beam intensity profile computation · 419bcfb9
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  419bcfb9
Jan 06, 2017
- gtSequenceMediaRefs: made more friendly if run from command line · 947d3720
  Nicola Vigano authored 8 years ago
  
  And it is quite fast anyway... Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  947d3720
- Small formatting changes to pre-processing functions · da0ac768
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  da0ac768
- Incoming beam intensity computation: improved function with initial support... · 295a1d1f
  Nicola Vigano authored 8 years ago
  
  Incoming beam intensity computation: improved function with initial support multiple detector geometries and better interpolation on detector Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  295a1d1f
Jan 04, 2017
- Fixed typo · 5a90037f
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  5a90037f
Dec 06, 2016
- gtFigureCreateFromPicture: fixed saving to file · 1ba25f59
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  1ba25f59
- Figures: fixed copy&pasto · eab3c817
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  eab3c817
- GtVolView: added simple/not-fully-functional zoom propagation mechanics · 13c26724
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  13c26724
Dec 01, 2016
- Reconstruction: added reconstruction options to output · 8b947460
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  8b947460
- Reconstruction: allow to return the reconstruction structures as output if requested · 1f95c8d5
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  1f95c8d5
- 6D-Reconstruction: complain for wrong options! · 1bd873d6
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  1bd873d6
Nov 30, 2016
- Thresholding: let's disable the std-dev weighting by default · 44334709
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  44334709
Nov 09, 2016
- Added utility function for removing borders from images or volumes · 8ab78be9
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  8ab78be9
- Re-introduced Wolfgang's last feature for launching clusters on OAR (to-be-tested) · 1f17e496
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  1f17e496
- Grain segmentation: added logic that uses the reconstruction std-dev to reduce artifacts · 969bb255
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  969bb255
- 6D-reconstruction: let's keep the more conservative l2 norm for the detector term · fe1879c0
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  fe1879c0
- Orientation-Sampling: reduced sampling strategies to two types: numpoints and... · 6463aca9
  Nicola Vigano authored 8 years ago
  
  Orientation-Sampling: reduced sampling strategies to two types: numpoints and resolution, each with and without ODF estimation Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  6463aca9
- 6D-Reconstructions: added a new detector data-fidelity term (KL), and two new... · 91155818
  Nicola Vigano authored 8 years ago
  
  6D-Reconstructions: added a new detector data-fidelity term (KL), and two new TV-norms (Isotropic TV and Nuclear TV) Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  91155818
- 6D-Twin-Reconstruction: small tweak in ospace oversize, when creating twin clusters · 1b81d61e
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  1b81d61e
- 6D-Reconstruction: added code path to specify ospace-resolution on single grain reconstructions · 5b80956a
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  5b80956a
- 6D-Reconstructions: merged gtReconstructGrainExtended =>... · 6e09b613
  Nicola Vigano authored 8 years ago
  
  6D-Reconstructions: merged gtReconstructGrainExtended => gtReconstructGrainOrientation, gtReconstructGrainTwinCluster => gtReconstructGrainCluster Code duplication reduced, and other small benefits Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  6e09b613
- 6D-Reconstructions: more updates to the reconstruction routines · 0eeca473
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  0eeca473
- 6D-Reconstruction: added new default choices for data fidelity term and for TV regularization · 732c113b
  Nicola Vigano authored 8 years ago
  
  data-fidelity: l_2 -> KL TV: l_1 -> l_{1,2} But the old ones remain available, even if they are not accessible to the user Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  732c113b
- 6D-Reconstructions: added time accounting for IO and post-processing steps · 43312ebf
  Nicola Vigano authored 8 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  43312ebf
- 6D-reconstruction: updated to same volume_downscaling procedure as the other... · dcb96d10
  Nicola Vigano authored 8 years ago
  
  6D-reconstruction: updated to same volume_downscaling procedure as the other reconstruction routines Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  dcb96d10
- Revert "Enable reconstruction of twinclusters on OAR, using gtSetupReconstruction" · 3979e771
  Nicola Vigano authored 8 years ago
  
  This reverts commit a3e9f983.
  3979e771
- Revert "add missing file for cluster reconstruction on OAR" · fabd60e3
  Nicola Vigano authored 8 years ago
  
  This reverts commit 4751df8e.
  fabd60e3
- Revert "small fix in case of grain_ids are provided as input" · f22b4973
  Nicola Vigano authored 8 years ago
  
  This reverts commit 44ee3120.
  f22b4973
Oct 12, 2016
- small fix in case of grain_ids are provided as input · 44ee3120
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  44ee3120
- add missing file for cluster reconstruction on OAR · 4751df8e
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  4751df8e
- Enable reconstruction of twinclusters on OAR, using gtSetupReconstruction · a3e9f983
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  a3e9f983
Oct 10, 2016

6D-Twin-Reconstruction: added support for importing shared included spots from... · 17eccabd

Nicola Vigano authored 8 years ago

6D-Twin-Reconstruction: added support for importing shared included spots from parent in case the twin doesn't have them

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

17eccabd

6D-Twin-Reconstruction: small tweaks from previous commit · 33057ca9
Nicola Vigano authored 8 years ago
```
Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
```
33057ca9

6D-Twin-reconstruction: allow reconstructing data-structure without loading it from disk · 084b3924

Nicola Vigano authored 8 years ago


This allows testing/debugging without waiting for the file-system to slowly do its job..

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

084b3924

6D-Twin-reconstruction: fixed selection of twin blobs from parent's shared... · 81452f18

Nicola Vigano authored 8 years ago

6D-Twin-reconstruction: fixed selection of twin blobs from parent's shared selection, and matching of the two

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

81452f18

Oct 06, 2016
- fix a small typo · 18a290d3
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  18a290d3
- fix a small typo · b2e94df9
  Wolfgang Ludwig authored 8 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  b2e94df9
- small fix in initialization of zero-array (does not accept logicals) · c89b3e4c
  Wolfgang Ludwig authored 8 years ago
  
  add possibility to look for SEG, ODF6D, VOL#D fields in gtFindFailedGrains Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  c89b3e4c
- remove automatic thresholding when launched as as a OAR job: it · 63aff727
  Wolfgang Ludwig authored 8 years ago
  
  causes systematic crashes of the OAR jobs.. Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  63aff727