Resolve "Convert ID16b fluoXAS spec to HDF5"
Closes #16 (closed)
A normal SPEC scan with XRF data has this information to locate the XRF data (saved in EDF files):
#S 1411 zapimage sampy 13 33 20 50 sampz 23 43 20 0
...
#C DIRECTORY : /data/id16b/inhouse2/Madeleine/20221026/sample_13_fluoXAS/area_fluoXAS_0355
#C RADIX : area_fluoXAS_0355
#C ZAP SCAN NUMBER : 357
#C ZAP IMAGE NUMBER : 0
A fluoXAS SPEC scan with XRF data has this information to locate the XRF data (saved in EDF files):
#S 1414 fXAS_scan 13.4 13.8
...
#C DIRECTORY : /data/id16b/inhouse2/Madeleine/20221026/sample_13_fluoXAS/area_fluoXAS_0355
This single fluoXAS scan (single SPEC scan) actually has 165 zapimage scans with XRF data saved in subdirectories area_fluoXAS_0190
to area_fluoXAS_0354
(on for each map).
In this MR we support fluoXAS scans. Since SPEC already has scans and subscans, I introduced the subsubscan. Since each zapimage
gets a single NXentry in HDF5, the name if {scan}.{subsubscan}
and the SPEC subscan
is ignored (always 1 for fluoXAS).
Edited by Wout De Nolf