Json cor file for concatenate in nightrail
For easiness of use within a workflow, the provided cor position can be read from a json file using the cors_file option
- example of usage, generated by night_rail_bm18 :
nxtomomill z-concatenate-scans \\\
--filename_template sessionIN1173_Bliss2NxMultiZScript_output_dir/sessionIN1173_Bliss2NxMultiZScript_output_XXXX.nx \\\
--target_file sessionIN1173_ConcatenateToHeliScanScript_concatenated.nx \\\
--entry_name entry0000 \\\
--total_nstages 35 \\\
--first_stage 0 \\\
--last_stage 5 \\\
--cors_file sessionIN1173_CompositeCorSimpleScript_cors.json \\\
--flats_from_before_after yes \\\
--scan_before sessionIN1173_Bliss2NxMultiZScript_output_dir/sessionIN1173_Bliss2NxMultiZScript_output_begin.nx \\\
--scan_after sessionIN1173_Bliss2NxMultiZScript_output_dir/sessionIN1173_Bliss2NxMultiZScript_output_end.nx
Edited by payno