Focus: add "psd" method
About
Follow-up of !64 (closed) (!).
To do
-
Implement PSD focus method -
Unit tests -
Update changelog/documentation
Notes
There was a slight discrepancy between octave-fasttomo3 and nabu for the focus distance estimation using psd
.
After investigation it turns out that the azimuthal integration of Fourier spectrum is not done the same way as the one of imagej (used by octave (!)).
A dumb python translation (do_radial_distribution
) was added and used as a reference.
It provides good results but is quite slow (4 secs for each 2048x2048 image)!.
To speed up a little bit, we use scikit-image: polar transformation + summing. This is inaccurate but probably more than enough in our case.
AI method Fourier options Focus point diff (um)
--------------------------------------------------------------
nabu_old |.|, "fourier" -1.416
nabu_old |.|^2, "fourier" -1.206
nabu_old |.|, "direct" -1.408
nabu_old |.|^2, "direct" -1.204
imagej |.| -0.1110
imagej |.|^2 0.1949
skimage |.| -0.0976
skimage |.|^2 0.231
Edited by Pierre Paleo