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Various fixes

Pierre Paleo requested to merge fix54 into master

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Various fixes, see below

To do

  • Fix crash when scikit-cuda is not available, switch to vkfft - close #543 (closed)
  • Fix crash when no flats/darks in dataset and flatfield = 1 - close #542 (closed)
  • (Bonus) remove cupy JIT warning
  • End-to-end reconstruction test
Edited by Pierre Paleo

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