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Shift finding for translation stage along beam

Nicola Vigano requested to merge translate_alignxc into master

Implements the fitting of the detector transverse movements, when displaced along the beam direction.

Main tasks

Reference octave function can be found here: https://gitlab.esrf.fr/tomotools/octave_archive/-/blob/master/m/tomotools/alignxc.m

To be done:

  • Refactor alignment module -> re-use of code
  • Implement optional band pass filters
  • Implement bi-quadratic regression of stationary point
  • Translate linear regression of translation shifts
  • Create Unit tests
  • Add documentation, examples and FAQ to dosctrings

Update June 15th 2020.

The following items have been added to the discussion / TODO list:

  • Convert the docstring style of the low pass function.
  • Decide where to put the low pass function (here as a hidden function, or a dedicated module in nabu.misc?).

Optionally:

  • Add tests for the peak fitting functions.

Deferred to a future MR:

  • Add checks for the shift overflow in the correlation output: pixels in the center of the image, crossing the boundary from left to right / top to bottom.

Update June 23rd 2020.

The following items have been added to the discussion / TODO list:

  • Add description on how to convert the returned values into the unit of usage (e.g. renormalize by pixel-size), to docstring of DetectorTranslationAlongBeam.find_shift (this solves one of the items above).
  • Set consistent typing throughout all alignment functions (as per: !41 (comment 76964)).
  • Use scipy.fftpack and rfft (as per: !41 (comment 76964)).
Edited by Nicola Vigano

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