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Imrpovements/fixes for ID16A

Pierre Paleo requested to merge id16a_improvements into master

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Some fixes for ID16 pipeline.

To do

  • Update id16_ctf configuration template: add median filter (close #374 (closed) )
  • Fix memory estimation (close #376 (closed) )
  • End-to-end reconstruction test
Edited by Pierre Paleo

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