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Created with Raphaël 2.2.01Oct30Sep19186530Aug2915952131Jul29252443128Jun2726251918121176543231May2924232221151110976229Apr28gtAddMatFile : commented the headergtPreprocessing : restructured the function using gtPrepDefaultParameters and commenting the headergtForwardSimulation_v2 : added 'R_vector' and 'spotid' info to outputinitialise_gt : Added to path '7_Fed2' folderfindValueIntoCell : fixed bug with 'cell2mat' option trueGtThreshold : fixed bug with title for GtGaugegtSetAnalysisDir : fixing bug with replacing '_' with '/'makeCornerHist : added inputs 'xtitle' 'ytitle' and output 'newFig'Commenting and small formatting...gtGetReflections : restored previously deleted function (June 2013) still used in the codeget_structure / print_structure : better commented and formattedbuild_list_v2 : added possible needed parameter 'prior_flatfield' as commented for the momentgtSetAnalysisDir : changed default / suggested value for the analysis directoryOnly commented differently in the headergtSymmetricReflections : used calculation of hklsp inside gtCrystSignedHKLs and already transform into rows as output. Removed trasposing from gtFillCrystFieldsgtSetup : created function for preprocessing default parameters, then add them to prep structure. To add parameters, using only the existing fields. In this way we trust completely in the build_list_v2.mgtCrystFindFamilies : Reads hklsp list from a grain and find the corresponding hkl family. Saves hkl, thetatypesp, dspacingsp, mult info for each reflection assigned to the grain (sorting according to dspacing values - needs single values in this case).gtSegDefaultParameters : updated parameters basing on the NewSegmentationGUI. Updated also build_list_v2.m.findValueIntoCell : added output argument to keep track of the 'values' not-found in 'inlist'.gtLastFileName : commented header and added freedom for the extension given by an extra argument. Default is 'mat'.gtCopyDataForTest : commented header and added option to copy data to a new folder, without 0_rawdata/Orig structure. To use this, just set alreadySetup flag to false.Compile functions using gtExternalCompileFunctions instead of gt_mccGeneral commenting, formatting, adding a blank line at the end, removing unused commented lines.gtFindSampleEdges : add line to close figure when it's done...Formatting and commenting a bit...gtReadTextFile : added argument 'iscell2mat' to convert from cell to matrixgtCrystSignedHKLs : check number of columns for reflection list (must be 3 or 4)gtCrystSignedHKLs : added output hklsp and thtypegtSymmetricReflections : removed unused variables and stored output values as beforegtDetectorTwotheta : changed variable 'int' to 'intensity' and directly transpose fields to have rowsgtCrystCalculateReflections : added dummy values for intensity to be then fixed via fable... Ask Jon maybe if there is a way to have intensities from fable directlygtReadTextFile : generalised use of reading text files... Now we can pass inputs as varargin to specify options for textscanBug fixed with gtCrystSignedHKLs arguments : spacegroup -> symmBugfix for crash during gtSetupReconstruction:New double threshold segmentation functions - GUI and function - for testingA speed up when subtracting median background from files. Activate with a flag in parameters for backwards compatibility.Added utility class for task time statistics accountingCell Operations / C functions: using SSE/SSE2 even when not unrolling explicitlyCell Operations: updated code and simplified future support for AVXby mistake reverted this bugfix previously