Commits · f7582b061e3f9224239f6d2cf3437a4d5d30f106 · graintracking / DCT

Apr 28, 2013

Added gtImagesc and gtImshow which permute visualized image · f7582b06

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@255 4c865b51-4357-4376-afb4-474e03ccb993

f7582b06

Fixed guiGtMontage: clicking on images now works · 04a191bf

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@254 4c865b51-4357-4376-afb4-474e03ccb993

04a191bf

Fixed GtSimpleCache behavior, and added some info · 1f24ae91

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@253 4c865b51-4357-4376-afb4-474e03ccb993

1f24ae91

Adapted gtSetup and crystallography functions to parameters version 2. · ccb2eb0b
Peter Reischig authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@252 4c865b51-4357-4376-afb4-474e03ccb993
```
ccb2eb0b

Changed GtMergeTable model · 9fde3765

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@251 4c865b51-4357-4376-afb4-474e03ccb993

9fde3765

Added field caching · 4e56d778

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@250 4c865b51-4357-4376-afb4-474e03ccb993

4e56d778

added GtMergeTable.m · 628fe689
Wolfgang Ludwig authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@249 4c865b51-4357-4376-afb4-474e03ccb993
```
628fe689

Added configurable ASTRA paths in conf.xml file · f13e2707

Nicola Vigano authored 13 years ago

This helps in installing DCT on crunch.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@248 4c865b51-4357-4376-afb4-474e03ccb993

f13e2707

Let create binaries directories to python scripts · b41b895a

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@247 4c865b51-4357-4376-afb4-474e03ccb993

b41b895a

Added GtLock which provides very basic locking facility · 2fbd8da4

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@246 4c865b51-4357-4376-afb4-474e03ccb993

2fbd8da4

Addition of the complete matching GUI in folder 3_pairmatchingGUI. Addition of... · 1c17b2dd

Peter Reischig authored 13 years ago and

Nicola Vigano committed 11 years ago

Addition of the complete matching GUI in folder 3_pairmatchingGUI. Addition of gtGeo functions to handle arbitrary geometry in folder zUtil_Geo. The new folders added to the path in initialise_gt. Addition of general maths functions in folder zUtil_Maths. No files removed at this stage.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@245 4c865b51-4357-4376-afb4-474e03ccb993

1c17b2dd

Modified to also handle full path name as input. · 508f1e6a
Peter Reischig authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@244 4c865b51-4357-4376-afb4-474e03ccb993
```
508f1e6a

Cleanup of 5_reconstruction and 4_grains · cbe8f350

Nicola Vigano authored 13 years ago

Wolfgang

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@243 4c865b51-4357-4376-afb4-474e03ccb993

cbe8f350

Parameters version 2 added (build_list_v2.m, make_parameters.m). Changes to... · 6b59f848

Peter Reischig authored 13 years ago and

Nicola Vigano committed 11 years ago

Parameters version 2 added (build_list_v2.m, make_parameters.m). Changes to fields in spot pair table (gtDBCreateSpotPairTable.m).

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@242 4c865b51-4357-4376-afb4-474e03ccb993

6b59f848

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@241 4c865b51-4357-4376-afb4-474e03ccb993 · e80bf727
Wolfgang Ludwig authored 13 years ago and Nicola Vigano committed 11 years ago

e80bf727
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@240 4c865b51-4357-4376-afb4-474e03ccb993 · 4d4ef00a
Wolfgang Ludwig authored 13 years ago and Nicola Vigano committed 11 years ago

4d4ef00a

Added initial and simple static read-only cache support for lazy loading · d92ca005

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@239 4c865b51-4357-4376-afb4-474e03ccb993

d92ca005

GtVolView removed useless/broken 2D pixel info · 68c108d6

Nicola Vigano authored 13 years ago

And slowly get rid of imaging toolbox needs

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@238 4c865b51-4357-4376-afb4-474e03ccb993

68c108d6

Extended and fixed parse_pv_pairs. · 50040d75

Nicola Vigano authored 13 years ago

It now supports three different assignment ways.

Squashed commit of the following:

commit 657a598ce0f966913f57cb095730ed7bc3db96ab
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 5 19:48:51 2012 +0100

    Fixed parse_pv_pairs

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 8fb2d329b0b9f025fa1b7befced157dfd0fc9434
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 5 19:21:11 2012 +0100

    Extended parse_pv_pairs to allow yet another behavior

    It is now also possible to add the missing fields to the structures

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@237 4c865b51-4357-4376-afb4-474e03ccb993

50040d75

Changed axes conventions to the natural convention from ID19's tomographic conventions · 3806fed9

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@236 4c865b51-4357-4376-afb4-474e03ccb993

3806fed9

Changed GtVolView and GtBaseGuiElem access permissions. · f6c4a382

Nicola Vigano authored 13 years ago


Squashed commit of the following:

commit af5795475319b1d75d525f629ba3a686a7b9b873
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 5 19:21:59 2012 +0100

    Changed access to getVolValue in GtVolView

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 96783df347e517d40f6bf1082ba6cec1b8cfbaeb
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 5 14:53:47 2012 +0100

    Added documentation and access restriction to methods for GUI objects

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@235 4c865b51-4357-4376-afb4-474e03ccb993

f6c4a382

Added extensible context menu for GtVolView and sons. · 018a0698

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@234 4c865b51-4357-4376-afb4-474e03ccb993

018a0698

Shared update every 10ms to all GUI classes · 79964f01

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@233 4c865b51-4357-4376-afb4-474e03ccb993

79964f01

Adding the lattice parameters relationships for each crystal system. · c2e61ccd

Nicola Vigano authored 13 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@232 4c865b51-4357-4376-afb4-474e03ccb993

c2e61ccd

Cleaning and simplifying the parameters.mat generation in gtSetup · 16cc8be3

Nicola Vigano authored 13 years ago

through build_list_v[number].m
[number] can be:
  0: old parameters
  1: current parameters
  2: future parameters

Removing of the template_*.mat files.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@231 4c865b51-4357-4376-afb4-474e03ccb993

16cc8be3

Fix gtGetHST_FileNamesAndType.m to enable file extension identification in gtHSTVolReader macro · ae961b2d
Yoann Guilhem authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@230 4c865b51-4357-4376-afb4-474e03ccb993
```
ae961b2d

Just formatting a little bit... · a800dfec

Laura Nervo authored 13 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@229 4c865b51-4357-4376-afb4-474e03ccb993

a800dfec

gtSetup improvements with specific functions · eab31215

Laura Nervo authored 13 years ago and

Nicola Vigano committed 11 years ago

for crystallography and xop...

- gtCrystXopInitialize
- gtCrystCifInitialize

and a little bit of formatting

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@228 4c865b51-4357-4376-afb4-474e03ccb993

eab31215

Added volumeFile fields for GtSample and GtPhase data structures. · 8d2693a4

Nicola Vigano authored 13 years ago

This will help in the future to have different volumes for multiple phases

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@227 4c865b51-4357-4376-afb4-474e03ccb993

8d2693a4

Fixed GtVolView for 2D images, and added Info button · f4f19637

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@226 4c865b51-4357-4376-afb4-474e03ccb993

f4f19637

Fixing of parameters template for gtSetup : · 95f505e7

Nicola Vigano authored 13 years ago

- case -1: load existing .mat file and take the template
- case  0: use old parameters.mat structure
- case  1: use current version of parameters
- case  2: use the futur version (Peter R.) of parameters (not completed yet)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@225 4c865b51-4357-4376-afb4-474e03ccb993

95f505e7

Renaming functions in 8_optimization with prefix "gtOptimize" · 271464a4

Nicola Vigano authored 13 years ago

and moving un-related functions to other folders
Creating folder zUtil_Twins

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@224 4c865b51-4357-4376-afb4-474e03ccb993

271464a4

Fixed misc, not very used things · e4207dcc

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@223 4c865b51-4357-4376-afb4-474e03ccb993

e4207dcc

GtVolView: Added Transparency toggle button (for the overlay) · 8795a44b

Nicola Vigano authored 13 years ago

It enables and disables transparency of the overlay

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@222 4c865b51-4357-4376-afb4-474e03ccb993

8795a44b

Added data structures for grain/phase/sample information in the later stages of DCT · a9d29395

Nicola Vigano authored 13 years ago

These classes are meant to be used as centralized support structures, that hold the metadata of the grains.
The heavy data will be located in a .mat file per each grain in the directory structure:

4_grains/phase_%02d/grain_%04d.mat

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@221 4c865b51-4357-4376-afb4-474e03ccb993

a9d29395

GtGuiThreshold: fixed negative minimum behavior and simplified init a little bit · 6f69bfb8

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@220 4c865b51-4357-4376-afb4-474e03ccb993

6f69bfb8

Fixed GTGuiThreshold for absorption volumes. But needs better control · b9d8234f

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@219 4c865b51-4357-4376-afb4-474e03ccb993

b9d8234f

Add little macros for TIFF files · 796692d5
Yoann Guilhem authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@218 4c865b51-4357-4376-afb4-474e03ccb993
```
796692d5

GtGuiThreshold: Update only every 10ms, because the eye doesn't see the difference · c5230e61

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@217 4c865b51-4357-4376-afb4-474e03ccb993

c5230e61

Fix previous bad commit · 282a9cd3
Yoann Guilhem authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@216 4c865b51-4357-4376-afb4-474e03ccb993
```
282a9cd3