Commits · cc5c452980e5a1c8d65f8723c0081fccaadaa433 · graintracking / DCT

Sep 30, 2013

GtThreshold : fixed bug with title for GtGauge · cc5c4529

Laura Nervo authored 11 years ago

GtGauge     : fixed bug if no arguments for title

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

cc5c4529

Sep 19, 2013
- gtSetAnalysisDir : fixing bug with replacing '_' with '/' · e43fb26f
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  e43fb26f
Sep 18, 2013
- makeCornerHist : added inputs 'xtitle' 'ytitle' and output 'newFig' · 208dd265
  Laura Nervo authored 11 years ago
  
  errorbar2 : added input 'color' cornerHist : added output 'f' and modified plot settings Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  208dd265
- Commenting and small formatting... · 4ca9e8e1
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  4ca9e8e1
- gtGetReflections : restored previously deleted function (June 2013) still used in the code · 54470a84
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  54470a84
Sep 06, 2013

get_structure / print_structure : better commented and formatted · 52ebd661
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
52ebd661
build_list_v2 : added possible needed parameter 'prior_flatfield' as commented for the moment · 7a645947
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
7a645947
gtSetAnalysisDir : changed default / suggested value for the analysis directory · 5eaf242c
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
5eaf242c
Only commented differently in the header · b8876797
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
b8876797

gtSymmetricReflections : used calculation of hklsp inside gtCrystSignedHKLs... · 81901a6e

Laura Nervo authored 11 years ago

gtSymmetricReflections : used calculation of hklsp inside gtCrystSignedHKLs and already transform into rows as output. Removed trasposing from gtFillCrystFields

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

81901a6e

gtSetup : created function for preprocessing default parameters, then add them... · 1609e788

Laura Nervo authored 11 years ago

gtSetup : created function for preprocessing default parameters, then add them to prep structure. To add parameters, using only the existing fields. In this way we trust completely in the build_list_v2.m
An additional check can be added using gtCheckParameters...to do list!

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

1609e788

gtCrystFindFamilies : Reads hklsp list from a grain and find the corresponding... · b9ea04d3

Laura Nervo authored 11 years ago

gtCrystFindFamilies : Reads hklsp list from a grain and find the corresponding hkl family. Saves hkl, thetatypesp, dspacingsp, mult info for each reflection assigned to the grain (sorting according to dspacing values - needs single values in this case).
Gives in the output extra info as thetatype, dpsacing, hkls, hklind for the complete list with the symmetrics.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

b9ea04d3

gtSegDefaultParameters : updated parameters basing on the NewSegmentationGUI.... · a444d95d

Laura Nervo authored 11 years ago

gtSegDefaultParameters : updated parameters basing on the NewSegmentationGUI. Updated also build_list_v2.m.

Summary :
  - Added: debug,writeblobs,writespots,writeedfs,wrapping,segmentation_stack_size,background_subtract_accelerate
  - Removed : icut,dbfields,minint (not used)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

a444d95d

findValueIntoCell : added output argument to keep track of the 'values' not-found in 'inlist'. · 903a8e2a
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
903a8e2a

gtLastFileName : commented header and added freedom for the extension given by... · 6156808d

Laura Nervo authored 11 years ago

gtLastFileName : commented header and added freedom for the extension given by an extra argument. Default is 'mat'.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

6156808d

gtCopyDataForTest : commented header and added option to copy data to a new... · 611c053a

Laura Nervo authored 11 years ago

gtCopyDataForTest : commented header and added option to copy data to a new folder, without 0_rawdata/Orig structure. To use this, just set alreadySetup flag to false.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

611c053a

Compile functions using gtExternalCompileFunctions instead of gt_mcc · c5231d0b
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
c5231d0b
General commenting, formatting, adding a blank line at the end, removing unused commented lines. · 98e6c7f3
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
98e6c7f3
gtFindSampleEdges : add line to close figure when it's done... · b82108d8
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
b82108d8
Formatting and commenting a bit... · e3b19fde
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
e3b19fde
gtReadTextFile : added argument 'iscell2mat' to convert from cell to matrix · 692837e8
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
692837e8
gtCrystSignedHKLs : check number of columns for reflection list (must be 3 or 4) · 711eb549
Laura Nervo authored 11 years ago
```
Take crystal system directly from parameters file

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
711eb549
gtCrystSignedHKLs : added output hklsp and thtype · 0badedfa
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
0badedfa
gtSymmetricReflections : removed unused variables and stored output values as before · d32aa4a4
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
d32aa4a4

gtDetectorTwotheta : changed variable 'int' to 'intensity' and directly... · ec381d6e

Laura Nervo authored 11 years ago

gtDetectorTwotheta : changed variable 'int' to 'intensity' and directly transpose fields to have rows
gtFillCrystFields : removed lines to transpose fields relative to gtDetectorTwotheta calculation

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

ec381d6e

gtCrystCalculateReflections : added dummy values for intensity to be then... · b97c91c2

Laura Nervo authored 11 years ago

gtCrystCalculateReflections : added dummy values for intensity to be then fixed via fable... Ask Jon maybe if there is a way to have intensities from fable directly

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

b97c91c2

gtReadTextFile : generalised use of reading text files... Now we can pass... · 68287758

Laura Nervo authored 11 years ago

gtReadTextFile : generalised use of reading text files... Now we can pass inputs as varargin to specify options for textscan

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

68287758

Bug fixed with gtCrystSignedHKLs arguments : spacegroup -> symm · 4bec7dbf
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
4bec7dbf

Sep 05, 2013

Bugfix for crash during gtSetupReconstruction: · 7550c42e

Stefan Schmiederer authored 11 years ago

type of parameters.rec.method was set to 'double' instead of 'char' which
resulted in an error. gtModifyStructure showed empty field and didn't
save the given method, either 3DART or 2DFBP, therefore crashing at
gtAstraAbsorption because no method was given.

Signed-off-by: Stefan Schmiederer <sschmied@esrf.fr>

7550c42e

Aug 30, 2013
- New double threshold segmentation functions - GUI and function - for testing · 5962f6f3
  Andrew King authored 11 years ago
  
  Signed-off-by: Andrew King <andrew.king@esrf.fr>
  5962f6f3
Aug 29, 2013

A speed up when subtracting median background from files. Activate with a... · b19cac08

Andrew King authored 11 years ago

A speed up when subtracting median background from files.  Activate with a flag in parameters for backwards compatibility.

Signed-off-by: Andrew King <andrew.king@esrf.fr>

b19cac08

Aug 15, 2013
- Added utility class for task time statistics accounting · 4736fde6
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  4736fde6
- Cell Operations / C functions: using SSE/SSE2 even when not unrolling explicitly · 8d9571b0
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  8d9571b0
- Cell Operations: updated code and simplified future support for AVX · d623f19b
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  d623f19b
Aug 09, 2013
- by mistake reverted this bugfix previously · 4198f6e3
  Wolfgang Ludwig authored 11 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  4198f6e3
- Revert "dimensions of rectangular images were confused in gtSetup when loading from xml file." · 1d562307
  Wolfgang Ludwig authored 11 years ago
  
  This reverts commit d6be2ff1.
  1d562307
- Come back to hklsp (and other sp fields) without entries for -h-k-l reflections · b8756b8b
  Wolfgang Ludwig authored 11 years ago
  
  Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  b8756b8b
- dimensions of rectangular images were confused in gtSetup when loading from xml file. · d6be2ff1
  Wolfgang Ludwig authored 11 years ago
  
  Repair creation of cryst structure from of .csv or .dat files Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>
  d6be2ff1
- Bugfix for GtSlideShow axes/dimensions. · dbae38bc
  Yoann Guilhem authored 11 years ago
  
  Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>
  dbae38bc
Aug 05, 2013
- Code formatting. · 33f14fec
  Yoann Guilhem authored 11 years ago
  
  Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>
  33f14fec