Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Lorenzo Valzania authored 10 years ago and Nicola Vigano committed 10 years ago

Signed-off-by: Lorenzo Valzania <valzania@rnice7-0201.esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

(thanks to Lorenzo for spotting some of them once again)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

(thanks to Lorenzon for spotting this and the previous bug out)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Signed-off-by: preischig <preischig@gmail.com>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Conversion from Miller to Miller-Bravais indexes : using lower case options: 'plane','pl','p' for planes; 'direction','dir','d' for directions.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Used 'stable' flag for intersect (findDifferentRowIntoMatrix) and unique (gtCrystFindFamilies)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtCrystGetSigmas : calculates sigma values for cubic and hcp materials (extracted from GtAssembleVol3D). For hcp materials, 'X' and 'Y' conventions are taken into account.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtCrystCalculateSymmetryOperators : Changed output names to 'symm_unique' and 'symm_all'; changed symm_all.rot to symm_all.g3; removed default value for phaseid
symmetry_operators_list.py        : added check for spacegroup number and added input argument #2 for the crystal system

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtDisorientation : added 'convention' parameter to switch crystal axes convention for hexagonal materials. Better commented the header and indented. Corrected conversion from 3-indexes to 4-indexes with new function.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtDisorientation : fixed bug if lattice parameters are provided. Applied the same to gtMisorientation

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtCrystFindFamilies : using ~isrow() to check reflections format: it should be one reflection each row, but not really confident that it works well

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtFillCrystFields : fixed name 'cryst.sg' for FABLE calculation of symmetry operators instead of 'cryst.opsym', which is filled already using the XOP/Diamond calculation
gtCrystCalculateSymmetryOperators : changed 'opsym' to 'sg' to be consistent with parameters.cryst; changed fields of 'sg' to 'rot' and 'trans' instead of 'sg_rot' and 'sg_trans'
build_list_v2 : updated the default list of parameters

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtSymmetricReflections : used calculation of hklsp inside gtCrystSignedHKLs and already transform into rows as output. Removed trasposing from gtFillCrystFields

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtCrystFindFamilies : Reads hklsp list from a grain and find the corresponding hkl family. Saves hkl, thetatypesp, dspacingsp, mult info for each reflection assigned to the grain (sorting according to dspacing values - needs single values in this case).
                      Gives in the output extra info as thetatype, dpsacing, hkls, hklind for the complete list with the symmetrics.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Take crystal system directly from parameters file

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtDetectorTwotheta : changed variable 'int' to 'intensity' and directly transpose fields to have rows
gtFillCrystFields : removed lines to transpose fields relative to gtDetectorTwotheta calculation

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtCrystCalculateReflections : added dummy values for intensity to be then fixed via fable... Ask Jon maybe if there is a way to have intensities from fable directly

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtReadTextFile : generalised use of reading text files... Now we can pass inputs as varargin to specify options for textscan

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Repair creation of cryst structure from of .csv or .dat files

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

gtCrystFindFamilies : given a list of signed hkls, finds the family for each reflection, with thetatype, dspacing and multiplicity. It uses the symmetry operators.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>