gtCrystCalculateReflections : added dummy values for intensity to be then fixed via fable... Ask Jon maybe if there is a way to have intensities from fable directly

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtReadTextFile : generalised use of reading text files... Now we can pass inputs as varargin to specify options for textscan

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

type of parameters.rec.method was set to 'double' instead of 'char' which
resulted in an error. gtModifyStructure showed empty field and didn't
save the given method, either 3DART or 2DFBP, therefore crashing at
gtAstraAbsorption because no method was given.


Signed-off-by: Stefan Schmiederer <sschmied@esrf.fr>

Signed-off-by: Andrew King <andrew.king@esrf.fr>

A speed up when subtracting median background from files.  Activate with a flag in parameters for backwards compatibility.

Signed-off-by: Andrew King <andrew.king@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

This reverts commit d6be2ff1.

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Repair creation of cryst structure from of .csv or .dat files

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Updated the use of the new version of gtModifyStructure to a general list of options to be checked with user...
Only FED code is missing from this update...

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

GtAssembleVol3D : put again default value for the option 'list' to do all the grains to the empty value [].
                  updated possible values for the option 'overlaps' and updated the gtSetupAssembleVolume function

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtFedSetParameters : changed argument from 'varargin' to 'defaults'... varargin contained only one argument which was assigned to 'defaults' variable

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

build_list_v2 : added OAR parameters at the end ("njobs","walltime","mem"). Adapted the code to that modification

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtModifyStructure : added fourth column to list with usertype, using this column to select fields to be displayed... Added type column to GUI and simplified the use of the function.
                    Usage:
                      Structure = gtModifyStructure(Structure, List, Usertype, Header)

                    Example:
                      parameters.acq = gtModifyStructure(parameters.acq, list.acq, 1, 'Modify acquistion parameters:')


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtIndexAllGrainValues : now it works also with struct arrays, giving ind1 as index for it; added argument 'cell2mat' to convert output to a matrix, if needed.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtTaperReadMapFile : simplified names of files to read ( it moves into the directory with files, reads the files, comes back to the original directory) and saves the U matrix as g matrix into the grain structure.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

findValueIntoCell : now it is possible to give as 'values' a vector or a scalar, then it is converted into a cell.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtSetupSegmentation : reformatting and commenting of the header, fixing some warnings from coding in matlab [disp(sprintf( -> fprintf ]

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>