Commits · b76ff4c6ebac546fda57c992d547b8fb480db16e · graintracking / DCT

Apr 28, 2013

Added basic strain functions for general geometry and any crystal system. · b76ff4c6
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@446 4c865b51-4357-4376-afb4-474e03ccb993
```
b76ff4c6

Small changes in Indexter. Indexing in one iteration takes 'end' paramaters,... · 170b15ed

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Small changes in Indexter. Indexing in one iteration takes 'end' paramaters, so it's easier to test them. Correction to merging grains on edge of fundamental zone.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@445 4c865b51-4357-4376-afb4-474e03ccb993

170b15ed

gtAnalyseForwardSimulation : analysis of grain conflicts and building of... · e9cbb1b3

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

gtAnalyseForwardSimulation : analysis of grain conflicts and building of 4_grains/grains_merge.mat and 4_grains/conflicts.mat to update input files for the reconstruction...

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@444 4c865b51-4357-4376-afb4-474e03ccb993

e9cbb1b3

Reconstruction : header commenting, better indenting, fixing the load of parameters.mat · f20a4870

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

gtSetupReconstruction : add possible compilation of gtChangeThreshold3D

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@443 4c865b51-4357-4376-afb4-474e03ccb993

f20a4870

gtAddMatFile : general header formatting and use of GtConditionalOutput(false) · 14eebd02
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@442 4c865b51-4357-4376-afb4-474e03ccb993
```
14eebd02

OAR : use fullfile for building paths · 33580f3a

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@441 4c865b51-4357-4376-afb4-474e03ccb993

33580f3a

Header formatting: replaced FUNCTIONS USED by FUNCTIONS CALLED · 394137dc

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@440 4c865b51-4357-4376-afb4-474e03ccb993

394137dc

Bug fixing in gtMatchUpdatePairs, gtIndexAllGrainValues. Speed up in... · 258da11c

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Bug fixing in gtMatchUpdatePairs, gtIndexAllGrainValues. Speed up in gtDBBlob2SpotTable_WriteDifspots.m when not writing edf files.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@439 4c865b51-4357-4376-afb4-474e03ccb993

258da11c

gtCreateGtSample : fix database connection and access to grainInfo.threshold info · 1ee99692
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@438 4c865b51-4357-4376-afb4-474e03ccb993
```
1ee99692

gtSetupReconstruction : Commenting and formatting the header, use of disp... · 07956999

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

gtSetupReconstruction : Commenting and formatting the header, use of disp instead of fprintf, etc...

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@437 4c865b51-4357-4376-afb4-474e03ccb993

07956999

Forward Simulation : add some useful functions to check missing grain_%.mat... · d1de97c4

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

Forward Simulation : add some useful functions to check missing grain_%.mat files and run the forward simulation
check -> gtFsimCheckMissingGrains
run -> gtFsimRunMissingGrains

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@436 4c865b51-4357-4376-afb4-474e03ccb993

d1de97c4

OAR : fix and improve... · 287a227c

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


logviewOar : change output structure to get the log filename for a given arrayid
             use of GtConditionalOutput class
             use of fullfile for paths

updateOar  : fix output from logviewOar

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@435 4c865b51-4357-4376-afb4-474e03ccb993

287a227c

removing access to sample.mat · 3873a3a4
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@434 4c865b51-4357-4376-afb4-474e03ccb993
```
3873a3a4
remove access to sample.mat from gtChangeThreshold3D · e7a92f7c
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@433 4c865b51-4357-4376-afb4-474e03ccb993
```
e7a92f7c
hopefully user friendly wrapper to setup parameters.cryst - ak · 184981f9
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@432 4c865b51-4357-4376-afb4-474e03ccb993
```
184981f9
change to FBP as default Reconstruction method for absorption volumes · 9a5211a1
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@431 4c865b51-4357-4376-afb4-474e03ccb993
```
9a5211a1
change to FBP as default Reconstruction method for absorption volumes · 65508b59
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@430 4c865b51-4357-4376-afb4-474e03ccb993
```
65508b59
tomo_utils.py : add routine to flip images horizontally or vertically · 94efa641
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@429 4c865b51-4357-4376-afb4-474e03ccb993
```
94efa641

gtCopyDataForTest : changed function from · 4412cc58

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

       gtCopyDataForTest(origdir,origname,newname,newdir)
                    to
       gtCopyDataForTest(old_pattern,new_pattern,workdir,newdir)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@428 4c865b51-4357-4376-afb4-474e03ccb993

4412cc58

CREATE gtDBCopyAllTables : copy database tables from a dataset with a different name · 5b200964

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

CREATE gtDBUpdateColumn : update values in a table in the database for a specific field

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@427 4c865b51-4357-4376-afb4-474e03ccb993

5b200964

samgeo parameters : remove from parameters lab2sam and sam2lab fields. · c1d03c01
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@426 4c865b51-4357-4376-afb4-474e03ccb993
```
c1d03c01

Fixed recent bug in gtDBBrowseDiffractionVolume: now it can return empty... · 6d1e42d5

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Fixed recent bug in gtDBBrowseDiffractionVolume: now it can return empty again. Change of dialogs for parameter settings in gtSetup.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@425 4c865b51-4357-4376-afb4-474e03ccb993

6d1e42d5

Bug fix in matching GUI: it won't let the fitting be done on data loaded from the database. · e2eb3091
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@424 4c865b51-4357-4376-afb4-474e03ccb993
```
e2eb3091
gtLastFileName : changed directory from 3_pairmatching to zUtil_Help · 7024dfb3
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@423 4c865b51-4357-4376-afb4-474e03ccb993
```
7024dfb3

Revert "bug in call to get new filename" because it was committed by mistake. · ee1f9872

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

This reverts commit 017c3aef95f135a3edb73d1bab6e6985e8233196.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@422 4c865b51-4357-4376-afb4-474e03ccb993

ee1f9872

bug fixes · 7b2f3929
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@421 4c865b51-4357-4376-afb4-474e03ccb993
```
7b2f3929

bug fix · 0aa84d5c

Andrew King authored 12 years ago and

Nicola Vigano committed 11 years ago

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@420 4c865b51-4357-4376-afb4-474e03ccb993

0aa84d5c

bug in call to get new filename · b0d4c4cb
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@419 4c865b51-4357-4376-afb4-474e03ccb993
```
b0d4c4cb
fixing gtSetup, calibration · 7b97df06
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@418 4c865b51-4357-4376-afb4-474e03ccb993
```
7b97df06

gtGetFunctionDeps : General formatting and commenting · 0ad7cfef

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@417 4c865b51-4357-4376-afb4-474e03ccb993

0ad7cfef

Move gtConvEnergyToWavelength to zUtil_Maths folder. · 954c4b43

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@416 4c865b51-4357-4376-afb4-474e03ccb993

954c4b43

Matching : - fix bug to save results · 1e97566f

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

           - use gtGeoSamDefaultParameters for the sample geometry default parameters

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@415 4c865b51-4357-4376-afb4-474e03ccb993

1e97566f

acquisition parameters: · e1f7d5bf

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Remove unused parameters : roi_x_off, roi_y_off, orig_xdet, orig_ydet
Replacements of:

orig_xdet   -->  true_detsizeu
orig_ydet   -->  true_detsizev
roi_x_off   -->  detroi_u_off
roi_y_off   -->  detroi_v_off

In gtCopy :

true_xdet   -->  true_detsizeu
true_ydet   -->  true_detsizev

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@414 4c865b51-4357-4376-afb4-474e03ccb993

e1f7d5bf

adding projection geometry output to gtCalculateGrain · 60b75d00
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@413 4c865b51-4357-4376-afb4-474e03ccb993
```
60b75d00

GtGrainsManager: fixed bug introduced in previous commit · bc6a7198

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@412 4c865b51-4357-4376-afb4-474e03ccb993

bc6a7198

Bug fixing and additions to matching GUI. Theta deviation of pairs in pair... · 9d178769

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Bug fixing and additions to matching GUI. Theta deviation of pairs in pair figure is now updated. New feature: flipping of spot images.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@411 4c865b51-4357-4376-afb4-474e03ccb993

9d178769

Formatting help and output in gtFindShifts · f18fbf59
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@410 4c865b51-4357-4376-afb4-474e03ccb993
```
f18fbf59

Misc GUI fixes: added single phase loading in GtGrainsManager and some other small tasks · 4afc8ac0

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@409 4c865b51-4357-4376-afb4-474e03ccb993

4afc8ac0

gtSetup : Modify acquisition default parameters · 670727c0

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

          - modify
                   gtLoadAcquisitionXML(parameters.acq,list.acq,xmlfname,interactive)
              into
                   gtLoadAcquisitionXML(xmlfname,interactive)
          - add function to set default acq parameters:
                 params_acq = gtAcqDefaultParameters(parameters.acq)
          - formatting and cleaning...

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@408 4c865b51-4357-4376-afb4-474e03ccb993

670727c0

Changes in assigning values to lab and sample geometry parameters. · 8f5d753d
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@407 4c865b51-4357-4376-afb4-474e03ccb993
```
8f5d753d