A speed up when subtracting median background from files.  Activate with a flag in parameters for backwards compatibility.

Signed-off-by: Andrew King <andrew.king@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

This reverts commit d6be2ff1.

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Repair creation of cryst structure from of .csv or .dat files

Signed-off-by: Wolfgang Ludwig <wolfgang.ludwig@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Updated the use of the new version of gtModifyStructure to a general list of options to be checked with user...
Only FED code is missing from this update...

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

GtAssembleVol3D : put again default value for the option 'list' to do all the grains to the empty value [].
                  updated possible values for the option 'overlaps' and updated the gtSetupAssembleVolume function

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtFedSetParameters : changed argument from 'varargin' to 'defaults'... varargin contained only one argument which was assigned to 'defaults' variable

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

build_list_v2 : added OAR parameters at the end ("njobs","walltime","mem"). Adapted the code to that modification

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtModifyStructure : added fourth column to list with usertype, using this column to select fields to be displayed... Added type column to GUI and simplified the use of the function.
                    Usage:
                      Structure = gtModifyStructure(Structure, List, Usertype, Header)

                    Example:
                      parameters.acq = gtModifyStructure(parameters.acq, list.acq, 1, 'Modify acquistion parameters:')


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtIndexAllGrainValues : now it works also with struct arrays, giving ind1 as index for it; added argument 'cell2mat' to convert output to a matrix, if needed.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtTaperReadMapFile : simplified names of files to read ( it moves into the directory with files, reads the files, comes back to the original directory) and saves the U matrix as g matrix into the grain structure.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

findValueIntoCell : now it is possible to give as 'values' a vector or a scalar, then it is converted into a cell.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtSetupSegmentation : reformatting and commenting of the header, fixing some warnings from coding in matlab [disp(sprintf( -> fprintf ]

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtFillCrystFields : commenting headers and sub-functions' headers and formatting the sub-functions, using the same variables (ii -> phase_id; parameters = subfunction(parameters, phase_id) )

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

gtCrystFindFamilies : given a list of signed hkls, finds the family for each reflection, with thetatype, dspacing and multiplicity. It uses the symmetry operators.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

build_list_v2 : updated the description of extra fields in cryst relative to FABLE calculation of reflections

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>