Commits · 8cf00fa31a9f0a88d2c9fd57c1aa277449107152 · graintracking / DCT

Apr 28, 2013

Formatting help for gtHSTParamWriter and gtHSTParamReader · 4f7c92c0
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@612 4c865b51-4357-4376-afb4-474e03ccb993
```
4f7c92c0

Raw Volume reader: fixed some small issues · cd94db7e

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@602 4c865b51-4357-4376-afb4-474e03ccb993

cd94db7e

fix problem with bounding box in reconstruction · e2f8b9ad
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@480 4c865b51-4357-4376-afb4-474e03ccb993
```
e2f8b9ad

Changes in 5_reconstruction, zUtil_TomoUtils and zUtil_DataStructures · 286456dd

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

GtAssembleVol3D : fix the use of 5_reconstruction/archive folder
gtForwardSimulate_v2 : clean commented lines related to the use of sample.mat
GtGuiThresholdVolume : change default volume name for segmentation to volume_mask.mat
GtSample : add absvol_file input variable in the constructor
gtCreateGtSample : fix the indenting
GtGrainsManager : handle absorption and dilated volumes

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@465 4c865b51-4357-4376-afb4-474e03ccb993

286456dd

Add a changeSlice interactive function in GtVolView · a97ea804
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@453 4c865b51-4357-4376-afb4-474e03ccb993
```
a97ea804
fixing gtSetup, calibration · 7b97df06
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@418 4c865b51-4357-4376-afb4-474e03ccb993
```
7b97df06

GtGrainsManager: fixed bug introduced in previous commit · bc6a7198

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@412 4c865b51-4357-4376-afb4-474e03ccb993

bc6a7198

Formatting help and output in gtFindShifts · f18fbf59
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@410 4c865b51-4357-4376-afb4-474e03ccb993
```
f18fbf59

Misc GUI fixes: added single phase loading in GtGrainsManager and some other small tasks · 4afc8ac0

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@409 4c865b51-4357-4376-afb4-474e03ccb993

4afc8ac0

Update of segmentation functions to new parameters; cleaning; removed the... · d6e12697

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Update of segmentation functions to new parameters; cleaning; removed the median filter in single thrashold segmentation as it is done in preprocessing

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@404 4c865b51-4357-4376-afb4-474e03ccb993

d6e12697

GtAssemble: fixed summed volume assembling · f3cc55be

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@400 4c865b51-4357-4376-afb4-474e03ccb993

f3cc55be

small fixes to indexter, GtVolView chooses which renderer to use · eb1bbea9
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@367 4c865b51-4357-4376-afb4-474e03ccb993
```
eb1bbea9

Misc fixes and typos/formatting in forward projection and Co. · 873cdf65

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@362 4c865b51-4357-4376-afb4-474e03ccb993

873cdf65

Fixed gtForwardSimulation_v2 after latest updates · 416b8ca2

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@356 4c865b51-4357-4376-afb4-474e03ccb993

416b8ca2

GtGrainsManager: added gui to segment and reconstruct in batch · aa9a6575

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@337 4c865b51-4357-4376-afb4-474e03ccb993

aa9a6575

Import HST parameter file reader and writer · ddee4b85
Yoann Guilhem authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@328 4c865b51-4357-4376-afb4-474e03ccb993
```
ddee4b85

GtGrainsManager: added segmented volume visual and reconstruction per each grain · 92ee10ae

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@327 4c865b51-4357-4376-afb4-474e03ccb993

92ee10ae

GtGrainsManager: fixed scrollbars in grain info visualization · 91a76ac3

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@324 4c865b51-4357-4376-afb4-474e03ccb993

91a76ac3

GtGrainsManager: added 'up to date' check for the dilated volume · 1e900e23

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@320 4c865b51-4357-4376-afb4-474e03ccb993

1e900e23

Added class and methods for thresholding/segmentation of grains · f847ee65

Nicola Vigano authored 13 years ago


And wired it into GtGrainsManager

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@317 4c865b51-4357-4376-afb4-474e03ccb993

f847ee65

GtGrainsManager: Added dilation control in Gui, and proper reloading · d8472c63

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@314 4c865b51-4357-4376-afb4-474e03ccb993

d8472c63

Queries: wired in the possibility to query the underlying 'sample' metadata structure · 5f01f10e

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@313 4c865b51-4357-4376-afb4-474e03ccb993

5f01f10e

Fixed a minor thing, and formatted code a little bit · 10278f6f

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@312 4c865b51-4357-4376-afb4-474e03ccb993

10278f6f

GtGrainsManager: fixed absorption overlay · e580a35d

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@311 4c865b51-4357-4376-afb4-474e03ccb993

e580a35d

GtGrainsManager: Volume visualization: Added radio button to choose kind of volume · 40ed14de

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@310 4c865b51-4357-4376-afb4-474e03ccb993

40ed14de

Bugfix and improvements · 13246ba6

Yoann Guilhem authored 13 years ago and

Nicola Vigano committed 11 years ago

- GtVolView handle every perspective possibility
- Renamed and speed up TIFF volume reader
- Add a TIFF volume writer

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@300 4c865b51-4357-4376-afb4-474e03ccb993

13246ba6

Fix GtVolview overlay and resizing window feature · bc879a11
Yoann Guilhem authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@299 4c865b51-4357-4376-afb4-474e03ccb993
```
bc879a11

GtGrainsManager: added absorption overlay visualization · 539e3e28

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@297 4c865b51-4357-4376-afb4-474e03ccb993

539e3e28

GtVolView: fixed no context menu when using an overlay · 8d4acbca

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@295 4c865b51-4357-4376-afb4-474e03ccb993

8d4acbca

GtGrainsManager: added showing Forward simulation result · 589cabcf

Nicola Vigano authored 13 years ago

And moved gtShowFSim to imagesc

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@294 4c865b51-4357-4376-afb4-474e03ccb993

589cabcf

GtGrainsManager: less hungry file checking · beab5a1e

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@292 4c865b51-4357-4376-afb4-474e03ccb993

beab5a1e

guiGtMontage: visualizes now omega and spot id · 0730cc31

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@291 4c865b51-4357-4376-afb4-474e03ccb993

0730cc31

Moved the new handling classes (GtAssembleVol3d, the gui and GtGrainsManager)... · 85dac9fb

Nicola Vigano authored 13 years ago

Moved the new handling classes (GtAssembleVol3d, the gui and GtGrainsManager) to last naming convention
And added assembling of all phases.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@288 4c865b51-4357-4376-afb4-474e03ccb993

85dac9fb

GtGrainsManager: added comments about what its methods do · 76c35c03

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@287 4c865b51-4357-4376-afb4-474e03ccb993

76c35c03

GtGrainsManager: added side bar and monitoring of volumes · 8f8466aa

Nicola Vigano authored 13 years ago

It automatically checks if they are up to date.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@286 4c865b51-4357-4376-afb4-474e03ccb993

8f8466aa

GtGuiAssembleVol3D: Added simple gui for assembling · 45893766

Nicola Vigano authored 13 years ago

And wired it in GtGrainsManager

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@282 4c865b51-4357-4376-afb4-474e03ccb993

45893766

GtGrainsManager: added scrollable listing of grains, and list of deselected grains · ecbd4f4e

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@274 4c865b51-4357-4376-afb4-474e03ccb993

ecbd4f4e

Added some fixes to GtVolView · e66a19eb

Nicola Vigano authored 13 years ago


Squashed commit of the following:

commit 7cc45aa26c0e3e6bb4a9ee79f990c68d5ecb9d42
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Mar 16 16:54:30 2012 +0100

    Added a small comment

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit e74adccc882113de8faa086c2e3c064f55e7be6f
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Mar 16 17:46:49 2012 +0100

    GtVolView: Moved overlay checking to initParams, to just do it when needed

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 829f351ef2c881548c501d76fcc8daf4025bd47b
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Mar 14 11:22:11 2012 +0100

    Temporary fix to GtVolView: waiting for Yoann to merge it.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@271 4c865b51-4357-4376-afb4-474e03ccb993

e66a19eb

GtGrainsManager: added some work, and features (in attached message) · c1238009

Nicola Vigano authored 13 years ago

And fixed some bugs in guiGtMontage / GtGuiThresholdGrain

Squashed commit of the following:

commit 05aecfb17a0cac3d53e296737fd1bbfa86cb02ba
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Thu Mar 15 19:07:02 2012 +0100

    GtGrainsManager: added some buttons to the grain panel, and wired some of them

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit da2d598cc8b63347ef2641ef77785baf2d1f1d9b
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Thu Mar 15 19:05:18 2012 +0100

    GtGuiThresholdGrain: fixed threshold change from method, and added saving on deletion

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit f1068f7aecd42a077a41f8cbced4d97a8578ff0e
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Thu Mar 15 14:50:40 2012 +0100

    GtGrainsManager: fixed grain info, and reorganized functions in file

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 158f2488710fd8ec67432d94c04d3e87c1dcdd41
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Mar 14 20:28:52 2012 +0100

    GtGrainsManager: added visualization of the details about the grains claiming a voxel, and the possibility to select/deselect voxels

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit ff7974de9e28ed70485c5fc8d1c8266ec9ba7f75
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Mar 14 12:43:21 2012 +0100

    Added function to know which grains claim a voxel

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit f1af616249cd5f3f05c35877dfa947e879eaefe5
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Mar 14 11:59:48 2012 +0100

    GtGrainsManager: cosmetic changes in visualization -> random CMap

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit ccfda5e3dc076f1377897c1f87901272f1c521a9
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Mar 14 11:59:10 2012 +0100

    GtGrainsManager: fixed selection of diffraction spots

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 0a07dba75df12450f974393e4486dba49b353673
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Mar 14 11:40:31 2012 +0100

    guiGtMontage: fixed case of just one diffspot

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit b9bceda6c4ce1f3a4a644d7f12da2842539d2809
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Tue Mar 13 19:48:21 2012 +0100

    GtGrainsManager: initial handling of volumes

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 2d9edfd8287a81b24640c0235cdd521098dc5be6
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Mar 9 18:43:35 2012 +0100

    Trivial change in GtGrainsManager, in initializing the caching method

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 4963e23b29a6354f6ac98a26356385077d0cbf7f
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Thu Mar 8 20:13:34 2012 +0100

    Fixed GtGrainsManager to work with the new GtSimpleCache implementation

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 576a2a1a2ce2ec8386b551d536748759aa7c852f
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Tue Mar 6 19:31:30 2012 +0100

    Added diffspot selection in GtGrainsManager, using cached (lazy) loading of grain data

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@269 4c865b51-4357-4376-afb4-474e03ccb993

c1238009

Added GtGrainsManager, migration function gtCreateGtSample and added 'spotting' ability to GtPhase · 9f45df01

Nicola Vigano authored 13 years ago


Squashed commit of the following:

commit 7e47b6deb9f7a5064e513a93dd76a231d5e12d36
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Tue Mar 6 19:29:33 2012 +0100

    Added saving of sample.mat

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit d8e55f7dbb80c1c518349851098b62440a48c47d
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Tue Mar 6 14:20:18 2012 +0100

    GtGrainsManager: fixed 'no plugins' case

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 6881052f785e1d4e512ee92ecd59737ba4d58b3b
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 5 20:22:47 2012 +0100

    Added plug-ins support for GtGrainsManager and initial volume info function

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit a650113dd033ef0638c16267db14d838425cd676
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 5 14:56:03 2012 +0100

    Modified GtGrainsManager to cope with underlying changes, added info and a couple of fixes

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 92d7cbfa1e721926b2b340374e37ee3f9899eb26
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 5 10:36:01 2012 +0100

    Fixed GtGrainsManager to work with the latest GtBaseGuiElem

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 9efdb54e17ff3275a3bbe1825bdd12972228d13d
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Mon Mar 5 10:27:43 2012 +0100

    Added 'spotting' functions to GtPhase, and cleaned creation of GtSample

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 72db58f652ee059225b3d31a739a139e810c5eb1
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Thu Mar 1 21:16:57 2012 +0100

    Added single grain visualization to GtGrainManager (and single phase support)

    Unfortunately it's not working yet

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 256aba18189f2aa477506775434d73091b5fddf8
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Feb 29 20:05:14 2012 +0100

    Initial introduction of the GUI: GtGrainManager

    It's not working and it is just a sketch of the future gui

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@267 4c865b51-4357-4376-afb4-474e03ccb993

9f45df01