Commits · 823696a90702ee12e8badfc471451e228dec6fc1 · graintracking / DCT

Apr 28, 2013

export_fig : add package to matlabDCT folder (placed in zUtil_Drawing). Useful... · d1dbac8f

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

export_fig : add package to matlabDCT folder (placed in zUtil_Drawing). Useful utility to export figures

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@961 4c865b51-4357-4376-afb4-474e03ccb993

d1dbac8f

Add zUtil_Taper to the matlab path · 4a0c17a0

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@959 4c865b51-4357-4376-afb4-474e03ccb993

4a0c17a0

Add zUtil_VTK in the Matlab path · 8d57a2b5
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@904 4c865b51-4357-4376-afb4-474e03ccb993
```
8d57a2b5
Get rid of some id19 functions, import the others · b578210b
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@794 4c865b51-4357-4376-afb4-474e03ccb993
```
b578210b

TwinTest : add some useful calculation to check the overlapping / merging / twin case · b50ae27e

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

           remove unused functions

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@769 4c865b51-4357-4376-afb4-474e03ccb993

b50ae27e

Added option to make id19's functions optional · ceb4e8d0

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@741 4c865b51-4357-4376-afb4-474e03ccb993

ceb4e8d0

initialise_gt.m : removed 'orthogonal_slicer' from path · 76967a4f

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@727 4c865b51-4357-4376-afb4-474e03ccb993

76967a4f

OAR/globals: initial commit to fix global variables (1/2) · ab8a85c8

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@616 4c865b51-4357-4376-afb4-474e03ccb993

ab8a85c8

Compiling: added option in the conf.xml file to specify matlab version · 8a747609

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@606 4c865b51-4357-4376-afb4-474e03ccb993

8a747609

Initialise: got rid of unused / broken paths · c4da60dc

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@557 4c865b51-4357-4376-afb4-474e03ccb993

c4da60dc

initialise_gt : sorting folders · ae4fa7af

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@512 4c865b51-4357-4376-afb4-474e03ccb993

ae4fa7af

zUtil_Strain2 folder added to the path. · 6ec2cf70
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@451 4c865b51-4357-4376-afb4-474e03ccb993
```
6ec2cf70

Better handling of configuration files, to let the user configure it easily · a23b67a5

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@364 4c865b51-4357-4376-afb4-474e03ccb993

a23b67a5

Addition of new Indexter in zUtil_Indexter. The previous one in zUtil_Index... · 6a79b37b

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Addition of new Indexter in zUtil_Indexter. The previous one in zUtil_Index should not be used anymore, but not yet deleted. Path updated in initialize_gt.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@352 4c865b51-4357-4376-afb4-474e03ccb993

6a79b37b

Two files to work on crunch computer. Andy (with much help from Yoann) · 860243d2
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@345 4c865b51-4357-4376-afb4-474e03ccb993
```
860243d2

DB: initial support in config file (not working yet) · 571e0c17

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@290 4c865b51-4357-4376-afb4-474e03ccb993

571e0c17

Added configurable ASTRA paths in conf.xml file · f13e2707

Nicola Vigano authored 13 years ago

This helps in installing DCT on crunch.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@248 4c865b51-4357-4376-afb4-474e03ccb993

f13e2707

Addition of the complete matching GUI in folder 3_pairmatchingGUI. Addition of... · 1c17b2dd

Peter Reischig authored 13 years ago and

Nicola Vigano committed 11 years ago

Addition of the complete matching GUI in folder 3_pairmatchingGUI. Addition of gtGeo functions to handle arbitrary geometry in folder zUtil_Geo. The new folders added to the path in initialise_gt. Addition of general maths functions in folder zUtil_Maths. No files removed at this stage.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@245 4c865b51-4357-4376-afb4-474e03ccb993

1c17b2dd

Cleanup of 5_reconstruction and 4_grains · cbe8f350

Nicola Vigano authored 13 years ago

Wolfgang

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@243 4c865b51-4357-4376-afb4-474e03ccb993

cbe8f350

Added data structures for grain/phase/sample information in the later stages of DCT · a9d29395

Nicola Vigano authored 13 years ago

These classes are meant to be used as centralized support structures, that hold the metadata of the grains.
The heavy data will be located in a .mat file per each grain in the directory structure:

4_grains/phase_%02d/grain_%04d.mat

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@221 4c865b51-4357-4376-afb4-474e03ccb993

a9d29395

Add little macros for TIFF files · 796692d5
Yoann Guilhem authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@218 4c865b51-4357-4376-afb4-474e03ccb993
```
796692d5

Fixed interactivity of gtVolView · ba5f57b4

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@196 4c865b51-4357-4376-afb4-474e03ccb993

ba5f57b4

Imported findshifts2.m -> zUtil_TomoUtils/gtFindShifts.m and cleaned it · e1bfbcad

Nicola Vigano authored 13 years ago

The file should be an example, and moreover the "block" functionality should be the only one.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@164 4c865b51-4357-4376-afb4-474e03ccb993

e1bfbcad

Small fixes and cleanup · 142b6f85

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@163 4c865b51-4357-4376-afb4-474e03ccb993

142b6f85

Again switching version work. · 34d39eb2

Nicola Vigano authored 13 years ago


Yoann & Nicola

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@162 4c865b51-4357-4376-afb4-474e03ccb993

34d39eb2

CUDA support paths · dea41907

Nicola Vigano authored 13 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@161 4c865b51-4357-4376-afb4-474e03ccb993

dea41907

GUI Layouts and guiGtMontage added to tree. · 5faad7a1

Nicola Vigano authored 13 years ago

This commit adds the GUI that can generate the list of selected difspots, ready for montage.

It also adds the layout toolbox.
The said toolbox is useful for GUIs that want to keep things organized.
It is BSD licensed, so it doesn't harm.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@157 4c865b51-4357-4376-afb4-474e03ccb993

5faad7a1

Added editor for mat-files / initial GUI for gtSetup · 536cbd18

Nicola Vigano authored 13 years ago

Some code is already shared between gtSetup and guiGtSetup, and this will be extended as the functionality of guiGtSetup is extended

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@144 4c865b51-4357-4376-afb4-474e03ccb993

536cbd18

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@134 4c865b51-4357-4376-afb4-474e03ccb993 · 875be36a
Wolfgang Ludwig authored 13 years ago and Nicola Vigano committed 11 years ago

875be36a

Attempt to make matlabDCT independent of a fixed path. · a7dfe8d2

Nicola Vigano authored 13 years ago

It should make it possible to run it from other paths.
Moreover I added some more portability, using fullfile.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@125 4c865b51-4357-4376-afb4-474e03ccb993

a7dfe8d2

EDF: imported and reworked EDF-files support into DCT project · 4c650e28

Nicola Vigano authored 13 years ago


Squashed commit of the following:

commit 31f6328381e5025cbfd7061ca4c1381a4fa1da2c
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Jan 4 20:02:35 2012 +0100

    EDF: pulled in pfWaitToRead, fixed, cleaned and renamed edf_wait_read

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit fc987760a8314ce697d219a8d9af02f58b5d5557
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Dec 9 15:34:32 2011 +0100

    Better error detection in gtCopy (and added the possibility to skip errors)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit ef1a00638f67e97286c5b27fd6782d0cc3715461
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Dec 9 15:20:57 2011 +0100

    EDF: Imported and reworked/fixed ID19's files

    So we don't depend on them for EDF traffic, and we can have proper error handling.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@115 4c865b51-4357-4376-afb4-474e03ccb993

4c650e28

Error Handling: added Matlab 2008+ code to better handle and read errors. · 558d6089

Nicola Vigano authored 13 years ago


Squashed commit of the following:

commit 3a7c88b522cb9ef1b5820b53e656615f8ceb0688
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Dec 9 15:14:21 2011 +0100

    Exception Handling: added better error display

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit f035e6ad55d7a3a2be5a8feabd2dad7b32381fdd
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Dec 2 12:13:51 2011 +0100

    Error/Exceptions handling: Added a nice printing function

    This makes the error more easy to investigate.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@114 4c865b51-4357-4376-afb4-474e03ccb993

558d6089

Distortion Correction / Squashed commit of the following: · 13dac616

Nicola Vigano authored 13 years ago


commit 1275e62408c926ea9b17de15199dd0b6aac5d8d7
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Dec 9 15:15:04 2011 +0100

    Undistort: reshape after closing the file, so to not lose control

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 3a8cb580885c82c111cd03639fd5615845d01171
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Thu Dec 1 00:48:31 2011 +0100

    Distortion Correction: finally exposed to gtCopy in a proper way, using ROIs

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 977815fbad90d800ec128b99844164a74fdf1558
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Nov 30 14:07:13 2011 +0100

    Distortion correction: fixed typos

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit 3612750dbbc6a271de330349154a0e7c91cb7643
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Nov 30 12:28:56 2011 +0100

    Distortion Correction: imported, clean and optimized code from ID19's archive

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@112 4c865b51-4357-4376-afb4-474e03ccb993

13dac616

XML / Squashed commit of the following: · 9b4b609c

Nicola Vigano authored 13 years ago


commit b609a51a0086eea16144a53fafafc86950652db9
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Wed Nov 30 12:29:56 2011 +0100

    XML: finished porting to new xml toolbox

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

commit d20ed9aa864cc4fc0fb1ee1fb4f3f579d8656b6e
Author: Nicola Vigano <nicola.vigano@esrf.fr>
Date:   Fri Nov 25 17:51:53 2011 +0100

    Changed XML handling to a BSD Licensed toolbox, instead of a proprietary one

    The new toolbox is backward and forward compatible, and has more features.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@106 4c865b51-4357-4376-afb4-474e03ccb993

9b4b609c

Code clean-up, included crystallography, massive upgrade - by LNervo · 4bd0c2af
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@103 4c865b51-4357-4376-afb4-474e03ccb993
```
4bd0c2af
Code clean-up, included crystallography, massive upgrade - by LNervo · 678b247d
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@102 4c865b51-4357-4376-afb4-474e03ccb993
```
678b247d
Per-user local matlab compile (by Nicola) · 66ad9fa7
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@100 4c865b51-4357-4376-afb4-474e03ccb993
```
66ad9fa7
Checkin from last modified matlab version · 191fa44e
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@79 4c865b51-4357-4376-afb4-474e03ccb993
```
191fa44e
Laura OAR update · ef9d9d06
Laura Nervo authored 13 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@71 4c865b51-4357-4376-afb4-474e03ccb993
```
ef9d9d06
AK - adding user friendly functions and gtModifyStructure for auto building · 4e0cf7e2
Andrew King authored 13 years ago and Nicola Vigano committed 11 years ago
```
GUIs

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@67 4c865b51-4357-4376-afb4-474e03ccb993
```
4e0cf7e2