- Dec 13, 2013
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Laura Nervo authored
gtSegmentationInitialise : Set segmentation method to 'doublethr_new' to be distinguished from 'doublethr' (standard segmentation routine) NewSegmentationPreGUI : Check existence of difspot images before running segmentation and asking for their deletion. gtSegmentationLaunchOAR : implemented the OAR submission using more cores on a single machine (default are 6 cores on one machine with 8000 Mb/core) Difspot images should be saved in 2_difspot/00000, 2_difspot/10000, etc... Signed-off-by:Laura Nervo <laura.nervo@esrf.fr>
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- Dec 11, 2013
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Yoann Guilhem authored
Signed-off-by:Yoann Guilhem <yoann.guilhem@esrf.fr>
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Laura Nervo authored
gtCrystGetSigmas : calculates sigma values for cubic and hcp materials (extracted from GtAssembleVol3D). For hcp materials, 'X' and 'Y' conventions are taken into account. Signed-off-by: -
Laura Nervo authored
Added parameter 'autoload' to defaults to be used in the GtGuiAssembleVol3D. Added parameters 'convention' and 'merge_angle' to defaults to calculate the sigma equivalent values and performs the twin test. Removed parameter 'symm' from defaults. GtGuiAssembleVol3D : set 'merge_angle' assemble parameter not editable from GUI. -
Laura Nervo authored
GtGrainsManager : enabled selection of 'phase volume' even if the field "phaseid" is 0 and disabled it if the volume to load is not the phase volume. Added argument to GtGuiAssembleVol3D to automatic load the volume when clicking a button in the GUI. GtGuiAssembleVol3D : added argument 'GMgui' to obj.conf in order to load automatically the volume in the connected GtGrainsManager GUI. Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Yoann Guilhem authored
Signed-off-by: -
Yoann Guilhem authored
Signed-off-by: -
Yoann Guilhem authored
Signed-off-by:
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- Dec 10, 2013
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Yoann Guilhem authored
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- Dec 05, 2013
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Laura Nervo authored
gtSetup : added check of sample rotation motor to set properly the value for rotdir. 'pmo', 'diffrz' are taken into account. Signed-off-by: -
Laura Nervo authored
gtPreprocessing : keep trace of the collection_dir as a list separated by ':' in the parameters.acq.collection_dir_old parameter Signed-off-by: -
Laura Nervo authored
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- Nov 26, 2013
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Laura Nervo authored
gtCrystCalculateSymmetryOperators : Changed output names to 'symm_unique' and 'symm_all'; changed symm_all.rot to symm_all.g3; removed default value for phaseid symmetry_operators_list.py : added check for spacegroup number and added input argument #2 for the crystal system Signed-off-by:
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Laura Nervo authored
Moved calculation of symmetry operators from fable or from our code into dedicated sub-functions. Signed-off-by: -
Laura Nervo authored
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- Nov 14, 2013
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Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Moved find* and gtGetSinglesValues functions to zUtil_Parameters; moved gtCreateInfoVol to zUtil_TomoUtils Signed-off-by:
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- Nov 08, 2013
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Laura Nervo authored
gtPythonCommand : now it's possible to run python scripts from matlab without the need of using the executable. Added the flag 'use_exec' for that purpose. Signed-off-by:
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- Nov 07, 2013
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Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
gtDisorientation : added 'convention' parameter to switch crystal axes convention for hexagonal materials. Better commented the header and indented. Corrected conversion from 3-indexes to 4-indexes with new function. Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
gtCrystAxisPoles : changed a bit the function using pars (varargin input), cleaned the code. Added 'axesRot' option to rotate sample CS to match for example pole figures. Added comments and variable names more reasonable. Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
gtFillCrystFields : added calculation of 'symm' operators and then saving that in the parameters.cryst(phaseid) Signed-off-by:
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- Nov 06, 2013
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Laura Nervo authored
GPU machine via OAR : updating the syntax to be used. i.e. 'oarsub -q gpu'. Adapted the functions and the OAR handle to that. Signed-off-by:
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- Oct 30, 2013
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Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
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Laura Nervo authored
make_oar_matlab : changed order of OAR directives to make all of them executed. The order is node / cpu / core Signed-off-by: -
Laura Nervo authored
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