- Dec 17, 2013
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Laura Nervo authored
gtGetSummedDifSpot : commented header and indenting... Difspots images are supposed to be in 2_difspot/*0000 folders. Signed-off-by:Laura Nervo <laura.nervo@esrf.fr>
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Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by:
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- Dec 16, 2013
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Laura Nervo authored
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- Dec 13, 2013
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Laura Nervo authored
batch-dev-conf.xml : added new segmentation function "gtSegmentationDoubleThreshold" to the list of functions to be compiled Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
gtStatus : added check if the new segmentation has been run (method is 'doublethr_new' in this case) Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
gtCheckParameters/gtModifyStructure : fixed bug with structures with structure as field, handling correctly the filling of those parameters by default build_structure : only comments make_parameters : Added debug flag Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
GtGuiAssembleVol3D : saved assembler params into the GrainsManager gui, in order to keep the choice of parameters for the assemble, if already done GtGrainsManager : added property 'assembler_params' to keep record of assembler parameters and pass them to the Assemble gui when launched. Signed-off-by: -
Laura Nervo authored
gtSegmentationInitialise : Set segmentation method to 'doublethr_new' to be distinguished from 'doublethr' (standard segmentation routine) NewSegmentationPreGUI : Check existence of difspot images before running segmentation and asking for their deletion. gtSegmentationLaunchOAR : implemented the OAR submission using more cores on a single machine (default are 6 cores on one machine with 8000 Mb/core) Difspot images should be saved in 2_difspot/00000, 2_difspot/10000, etc... Signed-off-by:
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- Dec 11, 2013
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Yoann Guilhem authored
Signed-off-by:Yoann Guilhem <yoann.guilhem@esrf.fr>
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Laura Nervo authored
gtCrystGetSigmas : calculates sigma values for cubic and hcp materials (extracted from GtAssembleVol3D). For hcp materials, 'X' and 'Y' conventions are taken into account. Signed-off-by: -
Laura Nervo authored
Added parameter 'autoload' to defaults to be used in the GtGuiAssembleVol3D. Added parameters 'convention' and 'merge_angle' to defaults to calculate the sigma equivalent values and performs the twin test. Removed parameter 'symm' from defaults. GtGuiAssembleVol3D : set 'merge_angle' assemble parameter not editable from GUI. -
Laura Nervo authored
GtGrainsManager : enabled selection of 'phase volume' even if the field "phaseid" is 0 and disabled it if the volume to load is not the phase volume. Added argument to GtGuiAssembleVol3D to automatic load the volume when clicking a button in the GUI. GtGuiAssembleVol3D : added argument 'GMgui' to obj.conf in order to load automatically the volume in the connected GtGrainsManager GUI. Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Yoann Guilhem authored
Signed-off-by: -
Yoann Guilhem authored
Signed-off-by: -
Yoann Guilhem authored
Signed-off-by:
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- Dec 10, 2013
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Yoann Guilhem authored
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- Dec 05, 2013
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Laura Nervo authored
gtSetup : added check of sample rotation motor to set properly the value for rotdir. 'pmo', 'diffrz' are taken into account. Signed-off-by: -
Laura Nervo authored
gtPreprocessing : keep trace of the collection_dir as a list separated by ':' in the parameters.acq.collection_dir_old parameter Signed-off-by: -
Laura Nervo authored
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- Nov 26, 2013
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Laura Nervo authored
gtCrystCalculateSymmetryOperators : Changed output names to 'symm_unique' and 'symm_all'; changed symm_all.rot to symm_all.g3; removed default value for phaseid symmetry_operators_list.py : added check for spacegroup number and added input argument #2 for the crystal system Signed-off-by:
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Laura Nervo authored
Moved calculation of symmetry operators from fable or from our code into dedicated sub-functions. Signed-off-by: -
Laura Nervo authored
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- Nov 14, 2013
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Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Signed-off-by: -
Laura Nervo authored
Moved find* and gtGetSinglesValues functions to zUtil_Parameters; moved gtCreateInfoVol to zUtil_TomoUtils Signed-off-by:
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- Nov 08, 2013
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Laura Nervo authored
gtPythonCommand : now it's possible to run python scripts from matlab without the need of using the executable. Added the flag 'use_exec' for that purpose. Signed-off-by:
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