Commits · 30dd540621d2e326b01bfe29d2095b2bbd6f01bc · graintracking / DCT

Apr 28, 2013

Image/Volume mean value: using gtImgMeanValue by default since it can handle volumes and images · 30dd5406

Nicola Vigano authored 12 years ago

And it is faster that matlab's implementations (Speedup of 1.5x)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@667 4c865b51-4357-4376-afb4-474e03ccb993

30dd5406

Add the options to output a stack of multiple TIFF files · 967cd952
Yoann Guilhem authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@666 4c865b51-4357-4376-afb4-474e03ccb993
```
967cd952

MEX/Compilation: added defines field · a57c8b38

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@665 4c865b51-4357-4376-afb4-474e03ccb993

a57c8b38

C++/gtImgMeanVal: updated version that outperforms matlab · c41d4398

Nicola Vigano authored 12 years ago

By a factor 1.5 on big images, and by a factor of 2 on small images

This mainly served as a test bench to improve my SSE2 and OpenMP skills :) no real need otherwise.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@664 4c865b51-4357-4376-afb4-474e03ccb993

c41d4398

Cell operations: added sqrt and another variant of exponential · efadf5a6

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@663 4c865b51-4357-4376-afb4-474e03ccb993

efadf5a6

Cell Operations: fixed copies and updated benchmarks · 2af16018

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@662 4c865b51-4357-4376-afb4-474e03ccb993

2af16018

Cell: added some functions to do expensive operations cell arrays · 9d8f8e49

Nicola Vigano authored 12 years ago

They are the equivalent of cellfun(@(x, y){x <op> y}, array1, array2) and similar

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@661 4c865b51-4357-4376-afb4-474e03ccb993

9d8f8e49

Diagnosis/Mem info: added bits information and 256bit type (AVX) to gtPrintDataAlignment · 5f6fa989

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@660 4c865b51-4357-4376-afb4-474e03ccb993

5f6fa989

Mex-Compilation/Python script: added regular expression matching and some comments · 52cf7e9a

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@659 4c865b51-4357-4376-afb4-474e03ccb993

52cf7e9a

TomoUtils: added a function to generate infoVol data structure (for gtRead*) · 05ed7aa1

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@658 4c865b51-4357-4376-afb4-474e03ccb993

05ed7aa1

GtPhase: added oversize feature to nighbours finding, and cleaned laura's code a little bit. · dcc69d61

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@657 4c865b51-4357-4376-afb4-474e03ccb993

dcc69d61

debugging multiphase handling... · adfb6f5c
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@655 4c865b51-4357-4376-afb4-474e03ccb993
```
adfb6f5c
add fallback solution to gtThresholdGrain3D · 83c61465
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@654 4c865b51-4357-4376-afb4-474e03ccb993
```
83c61465

OAR/update: fix for undefined variable I introduced earlier · 0182fed8

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@653 4c865b51-4357-4376-afb4-474e03ccb993

0182fed8

Segmentation/doublethr: tried to cope with strange behavior and reformatted code a little bit · dd05096d

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@652 4c865b51-4357-4376-afb4-474e03ccb993

dd05096d

OAR: fixed a bug when deleting arrays. updateOar still needs some commenting!! · 221fddf7

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@651 4c865b51-4357-4376-afb4-474e03ccb993

221fddf7

Bug fixes. Now only pairs of the active phase are used for fitting. Error... · d971c939

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Bug fixes. Now only pairs of the active phase are used for fitting. Error filter value is displayed on opening as it is in the parameters file.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@650 4c865b51-4357-4376-afb4-474e03ccb993

d971c939

temporary fix for database in gtDBBlob2SpotTable · b37e0388
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@649 4c865b51-4357-4376-afb4-474e03ccb993
```
b37e0388
fixing a coordinate bug in gtForwardSimulate - fill sample.mat during processing · 6cff9bb9
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@648 4c865b51-4357-4376-afb4-474e03ccb993
```
6cff9bb9
minor · 0055f198
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@647 4c865b51-4357-4376-afb4-474e03ccb993
```
0055f198

OAR: fixed a bug that I introduced in a previous commit, regarding resubmitOar. Sorry! · 592ac970

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@646 4c865b51-4357-4376-afb4-474e03ccb993

592ac970

Twins : attempt to handle twins and to forward simulate all the possible... · 5f01a397

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

Twins : attempt to handle twins and to forward simulate all the possible variants given an orientation axis-angle

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@645 4c865b51-4357-4376-afb4-474e03ccb993

5f01a397

logviewOar : fix bug · cccaae5d

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@644 4c865b51-4357-4376-afb4-474e03ccb993

cccaae5d

Cleanups and small fixes · 0d9f6f86

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@643 4c865b51-4357-4376-afb4-474e03ccb993

0d9f6f86

OAR: fixed global DB variable in gtForwardSimulate · 714a3436

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@642 4c865b51-4357-4376-afb4-474e03ccb993

714a3436

SoftThresholding: finally fixed ill cases (no threshold or multiple threshold passed) · 98f689dc

Nicola Vigano authored 12 years ago

This generates a warning, in ill cases

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@641 4c865b51-4357-4376-afb4-474e03ccb993

98f689dc

gtReadBoundaryProperties : more stable version (fix according to the MATLAB editor) · 0f25bf30
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@640 4c865b51-4357-4376-afb4-474e03ccb993
```
0f25bf30

gtUpdateGrainsConflicts : changed header only ! · a7ee25b9

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@639 4c865b51-4357-4376-afb4-474e03ccb993

a7ee25b9

gtRenderGrains : useful function adapted to the DCT code to make 3D... · 29382563

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

gtRenderGrains : useful function adapted to the DCT code to make 3D visualization of grains in the volume...

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@638 4c865b51-4357-4376-afb4-474e03ccb993

29382563

Fsim check output : fix bug · abcb1038

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@637 4c865b51-4357-4376-afb4-474e03ccb993

abcb1038

gtINDEXMatchGrains : returns 'pippo' cell structure to set as parameters.index.forcemerge variable · 5483a043

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

to run gtINDEXTER(phaseid, flag, ...., forcemerge = true)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@636 4c865b51-4357-4376-afb4-474e03ccb993

5483a043

OAR : fix bug for .log .err .out filenames (use same fileroot as for file .oar and .params · 9d36f015
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@635 4c865b51-4357-4376-afb4-474e03ccb993
```
9d36f015

OAR: fixed a bug in the oar stat reading · 01eedc86

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@634 4c865b51-4357-4376-afb4-474e03ccb993

01eedc86

Compilation/OAR: yet another fix for global variables (2/2) · ee1da7c3

Nicola Vigano authored 12 years ago

I forgot to add gtCopyCorrectUndistortCondor to the previous commit: a3ccdbd84a018fe381b25b350f207a8adc7bc0da

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@633 4c865b51-4357-4376-afb4-474e03ccb993

ee1da7c3

gtINDEXMatchGrains : add output with conflicts list results · 2ca77b0d

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@632 4c865b51-4357-4376-afb4-474e03ccb993

2ca77b0d

gtOptimizePlotUVW : Hard coded labgeo.detsizeu and labgeo.detsizev to 2048 · c4e0a1eb

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

HARD CODED!!!

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@631 4c865b51-4357-4376-afb4-474e03ccb993

c4e0a1eb

gtGetReflections : replaced sym with symm, not to be confused with the... · 54345c43

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

gtGetReflections : replaced sym with symm, not to be confused with the function sym() which uses the symbolic toolbox licence

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@630 4c865b51-4357-4376-afb4-474e03ccb993

54345c43

Color maps : fixing bugs for c-axis and IPF maps. · 3ef96488

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@629 4c865b51-4357-4376-afb4-474e03ccb993

3ef96488

gtASTRA3D : remove ; from function def · 43d9cc96

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@628 4c865b51-4357-4376-afb4-474e03ccb993

43d9cc96

logviewOar : fix bug · 8cf00fa3

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@627 4c865b51-4357-4376-afb4-474e03ccb993

8cf00fa3