Commits · 27301dd71b83a65e2652b66bdc9f02597edde688 · graintracking / DCT

Apr 28, 2013

Added correction for numerical errors to get proper zeros. · 27301dd7
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@552 4c865b51-4357-4376-afb4-474e03ccb993
```
27301dd7
mod to allow single values to be inserted without error · fe4627ef
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@551 4c865b51-4357-4376-afb4-474e03ccb993
```
fe4627ef

build_list_v2 : killed trailing spaces and modified the 4th column for acq,... · 4afc46cd

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

build_list_v2 : killed trailing spaces and modified the 4th column for acq, prep, labegeo, dataset, samgeo, xop, cryst structures

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@550 4c865b51-4357-4376-afb4-474e03ccb993

4afc46cd

Conflicts : update routine and add function to solve automatically some conflicts · e26983bb
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@549 4c865b51-4357-4376-afb4-474e03ccb993
```
e26983bb

GtPhase : add useful methods · 4769032e

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@548 4c865b51-4357-4376-afb4-474e03ccb993

4769032e

EDF: some new data types and better scanning of composite fields · a5459878

Nicola Vigano authored 12 years ago

We could also add a conditional transpose of X and Y.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@546 4c865b51-4357-4376-afb4-474e03ccb993

a5459878

EDF: added a tool to verify the header length and other misc errors in EDFs · 8d9e93c5

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@545 4c865b51-4357-4376-afb4-474e03ccb993

8d9e93c5

stupid typo fixed · c5ee4a65
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@544 4c865b51-4357-4376-afb4-474e03ccb993
```
c5ee4a65

Added 'row'/'col' input to gtMathsRotationMatrixComp to avoid confusion.... · 86744eeb

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Added 'row'/'col' input to gtMathsRotationMatrixComp to avoid confusion. Modified the caller functions accordingly.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@543 4c865b51-4357-4376-afb4-474e03ccb993

86744eeb

Added 'row'/'col' input to gtMathsRotationMatrixComp to avoid confusion.... · 097fc3e2

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Added 'row'/'col' input to gtMathsRotationMatrixComp to avoid confusion. Modified the caller functions accordingly.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@542 4c865b51-4357-4376-afb4-474e03ccb993

097fc3e2

Fixed bug: now returns correct values instead of NaN-s if input lines have... · e1a501bc

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Fixed bug: now returns correct values instead of NaN-s if input lines have numerically exact intersections.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@541 4c865b51-4357-4376-afb4-474e03ccb993

e1a501bc

Help modified. · ddf46ecf
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@540 4c865b51-4357-4376-afb4-474e03ccb993
```
ddf46ecf
Function deleted. Use gtIndexAllGrainValues instead. · 0664e6b5
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@539 4c865b51-4357-4376-afb4-474e03ccb993
```
0664e6b5

EDF: fixed header length determination, so we can skip checking it each time! · fd7e9b38

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@538 4c865b51-4357-4376-afb4-474e03ccb993

fd7e9b38

DB:multipleInsert made it even faster and cleaner · a2522431

Nicola Vigano authored 12 years ago


another 5-10x more.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@537 4c865b51-4357-4376-afb4-474e03ccb993

a2522431

sample.mat : fix bug with spot2grain and sample loading and updating... · 31eaed50

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


routine:

gtSetupForwardSimulation
	gtFsimCheckMissingGrains
		gtFsimRunMissingGrains
gtSetupReconstruction
gtCreateGtSample

Conflicts : update and improving the routine.

gtAnalyseForwardSimulation
gtUpdateGrainsConflicts

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@536 4c865b51-4357-4376-afb4-474e03ccb993

31eaed50

gtForwardSimulate_v2 : fix bug with spot2grain.mat file and use the new... · 6697ad2c

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

gtForwardSimulate_v2 : fix bug with spot2grain.mat file and use the new function for default parameters

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@535 4c865b51-4357-4376-afb4-474e03ccb993

6697ad2c

Partial cleaning of gtForwardSimulate* functions :D Keeping the one we use: gtForwardSimulate_v2.m · 5860291b
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@534 4c865b51-4357-4376-afb4-474e03ccb993
```
5860291b

gtSetup : add default parameters functions to reduced the length of gtSetup... · 4908f2e6

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

gtSetup : add default parameters functions to reduced the length of gtSetup and simplify the reset of some parameters

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@533 4c865b51-4357-4376-afb4-474e03ccb993

4908f2e6

Cleaning of the 2_difspot folder · 1a4bb2e7
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@532 4c865b51-4357-4376-afb4-474e03ccb993
```
1a4bb2e7
Fixed recent bug; grain centers are now ok. Highlighting works. · 667f9d32
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@531 4c865b51-4357-4376-afb4-474e03ccb993
```
667f9d32

Revert "EDF/header: Fix that should prevent misaligned reading of blobs! to be verified!" · 86d18cc2

Nicola Vigano authored 12 years ago

This reverts commit 7df5454a047f40d10f39052f9802fb72f67784a5.

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@530 4c865b51-4357-4376-afb4-474e03ccb993

86d18cc2

Initial cleaning on 2_difspot · e43218d8
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@529 4c865b51-4357-4376-afb4-474e03ccb993
```
e43218d8
Deleted gtHKL2Cart. · dcd68d29
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@528 4c865b51-4357-4376-afb4-474e03ccb993
```
dcd68d29
Deleted earlier functions for orientation in Rodrigues space. · d06470ca
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@527 4c865b51-4357-4376-afb4-474e03ccb993
```
d06470ca
Modified help only, not the code. · e524f7df
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@526 4c865b51-4357-4376-afb4-474e03ccb993
```
e524f7df
Deleted gtINDEXSetup.m. Use gtSetupIndexing instead. · 226ed5ed
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@525 4c865b51-4357-4376-afb4-474e03ccb993
```
226ed5ed
Cleaning. Deleted old functions in folder 4_grains related to matching and indexing. · 41fcef8e
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@524 4c865b51-4357-4376-afb4-474e03ccb993
```
41fcef8e
gtSetupReconstruction : set 1 minute the time for gtChangeThreshold3D for each grain · 7d7b4aac
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@523 4c865b51-4357-4376-afb4-474e03ccb993
```
7d7b4aac
Conflicts : update sample.mat with conflicts info. Added field GtPhase.nofConflicts · 24572c1b
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@522 4c865b51-4357-4376-afb4-474e03ccb993
```
24572c1b
gtCreateGtSample : remove check of missing fields in grain_%%%%.mat · fd86ec28
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@521 4c865b51-4357-4376-afb4-474e03ccb993
```
fd86ec28

Forward Simulation : remove use of spot2grain.mat and sample.mat · b1b5ab94

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@520 4c865b51-4357-4376-afb4-474e03ccb993

b1b5ab94

gtForwardSimulate_v2 : fix bug · 0dbcd003

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@519 4c865b51-4357-4376-afb4-474e03ccb993

0dbcd003

gtCreateGtSample : fix bug if grain.threshold or grain.seg don't exist · dcd5bb7c
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@518 4c865b51-4357-4376-afb4-474e03ccb993
```
dcd5bb7c

Code formatting (a little bit...) · 2fd3110c

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@517 4c865b51-4357-4376-afb4-474e03ccb993

2fd3110c

EDF/header: Fix that should prevent misaligned reading of blobs! to be verified! · 0c715ce2

Nicola Vigano authored 12 years ago


If source of bugs, please revert it!

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@516 4c865b51-4357-4376-afb4-474e03ccb993

0c715ce2

EDF/BlobSegmentation: reused EDF dataformat information, and just recompute the headerlength · 9b027bce

Nicola Vigano authored 12 years ago

This drops the EDF read time to the 20% of before. (6x speedup)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@515 4c865b51-4357-4376-afb4-474e03ccb993

9b027bce

build_list_v2 : add 4th column for user flag (0: not display, 1: basic, 2: expert) · 780787b9

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

                default 2!

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@513 4c865b51-4357-4376-afb4-474e03ccb993

780787b9

initialise_gt : sorting folders · ae4fa7af

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@512 4c865b51-4357-4376-afb4-474e03ccb993

ae4fa7af

Segmentation/dbMultipleInsert: initial fix for performance bug and huge cleanup of the code · 8230b12a

Nicola Vigano authored 12 years ago

The insertion of multiple columns to the database now takes ~28-30% of the time it was taking before.
Anyway, there still can be a speedup in in grouping more "sprintf"s together. (loop unrolling)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@511 4c865b51-4357-4376-afb4-474e03ccb993

8230b12a