Commits · 208a4b40f520919253a118bc15e89235a560e463 · graintracking / DCT

Apr 19, 2014
- gtCrystSetupPhase added to repo. Helps setting up a crystallographic phase. · 208a4b40
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  208a4b40
Apr 18, 2014
- gtDBListTables added to repo. It lists all graintracking tables. · 69a4f77b
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  69a4f77b
- gtIndexAddInfo: added checks and warnings; uses gtFitFwdSimGrains · f9d640ca
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  f9d640ca
Apr 10, 2014
- build_list_v2: added writehdf5 to parameters.seg · 15ebb1bc
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  15ebb1bc
- Improved check and feedback for database table creation. · fd9cc548
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  fd9cc548
- gtINDEXCreateInputData: small bug fix · ba59cf9f
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  ba59cf9f
- build_list_v2: modified parameter descriptions · 5c1239ec
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  5c1239ec
- initialise_gt: added warning about graphics rendering on Windows PC · 4fad865b
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  4fad865b
- Modified default reconstruction parameters (in gtRecDefaultParameters) · bbe8fa51
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  bbe8fa51
- gtSetup: improved workflow and feedback · 3a70c0df
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  3a70c0df
- gtUpdateXmlFile: formatting · ff81921d
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  ff81921d
- gtSequenceMedianRefs: now accepts empty workingdirectory input · c77e3d0f
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@gmail.com>
  c77e3d0f
- gtCreateAbsLive: modified to process extra images at end of scan · ff3f0d1a
  preischig authored 10 years ago
  
  Signed-off-by: preischig <preischig@xnovotech.com>
  ff3f0d1a
Apr 03, 2014
- Revert "gtCalculateGrain: way faster, thanks to importing some work from gtIndexFwdSimGrains" · f8bd6a25
  Nicola Vigano authored 10 years ago
  
  This reverts commit 14dc4789.
  f8bd6a25
- gtCalculateGrain: way faster, thanks to importing some work from gtIndexFwdSimGrains · 14dc4789
  Nicola Vigano authored 10 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  14dc4789
Apr 02, 2014
- gtCalculateGrain: simplified and sped up a bit more. · 39745507
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  39745507
Apr 01, 2014
- Blobs: fixed bug in forward simulation · 89b2b132
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  89b2b132
Mar 31, 2014
- Recgeo: added basic recgeo support in setup files · 394f0335
  Nicola Vigano authored 11 years ago
  
  (it is used by gtGeoProjForReconstruction) Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  394f0335
- gtForwardSimulate: fixed and passed included information forward · e2d13ada
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  e2d13ada
- gtCalculateGrain: vectorized, sped up and simplified · 8d841ed6
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  8d841ed6
- Fixed Lab -> Sam trivial bug (wrong logic of checking if a variable exists) · b00c62b5
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  b00c62b5
- Blobs: improved conversion and creation · c4ae6992
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  c4ae6992
- Blobs: Added useful utility for generating blobs from the database blobs · 16910d88
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  16910d88
- Blobs: initial experimental code for generating blobs in grain_%04d.mat files · 377bb97d
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  377bb97d
- Hopefully speedup gtCalculateGrain · 3011dde9
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  3011dde9
- parse_pv_pairs: added possibility to use classes · a41c4c21
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  a41c4c21
- Fixed Noise generation functions · 9d694ad2
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  9d694ad2
- GtVolView: added option for visualizing the sum of cells · 5b6249f2
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  5b6249f2
- GtMultiVolView: reduced memory consumption of cell sum · 271c28bf
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  271c28bf
- Signals: fixed cell signal energy and power calculation, and added extinction noise generation · ebc5bca7
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  ebc5bca7
- Signals can be in cell arrays · cc4ba4bb
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  cc4ba4bb
- Added signal analysis basic functions · cf00d171
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  cf00d171
- Benchmarks: added some variable-cell tests · 862f9d19
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  862f9d19
- GtVolView: fixed bug in volume comparison · 707ad5dc
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  707ad5dc
- Fixed formatting of Segmentation code · 8ab9ee00
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  8ab9ee00
- GtTaskStatistics: added formatted output generation · 5c436a09
  Nicola Vigano authored 11 years ago
  
  Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>
  5c436a09
Mar 27, 2014
- gtIndexAllGrainValues: modified help. · 0b265049
  preischig authored 11 years ago
  
  Signed-off-by: preischig <preischig@xnovotech.com>
  0b265049
- gtIndexAddInfo: added fwd simulation at end. · 72a86991
  preischig authored 11 years ago
  
  Signed-off-by: preischig <preischig@xnovotech.com>
  72a86991
Mar 26, 2014

gtIndexFwdSimPairs: gives warning instead of error for missing reflections · aa3ed4da
preischig authored 11 years ago
```
Signed-off-by: preischig <preischig@xnovotech.com>
```
aa3ed4da

GtThreshold: bug fix in computing segmentation threshold. · 06f6c4a7

preischig authored 11 years ago

The computed threshold was not a continuous function of the parameters -> very bad!
Imagine if meanvol = 1, and using default values for percentile 1 and 2:
  if stdvol = 1.00001  -> threshold_val = 0.25
  if stdvol = 0.99999  -> threshold_val = 0.8
This is corrected now by using percentile2 only.

Signed-off-by: preischig <preischig@xnovotech.com>

06f6c4a7