Commits · 036d8ab26abb1f14fb8a4ec1d159d1309428b34b · graintracking / DCT

Oct 09, 2013
- gtDisorientation : fixed bug if lattice parameters are provided. Applied the... · 036d8ab2
  Laura Nervo authored 11 years ago
  
  gtDisorientation : fixed bug if lattice parameters are provided. Applied the same to gtMisorientation Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  036d8ab2
- gtIPFCmap : added LD to output filename; general header commenting · fcbe3a90
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  fcbe3a90
Oct 08, 2013
- general commenting and formatting... · d7c7da3c
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  d7c7da3c
- gtSetupIndexing : added option to use default strategy or/and default indexing parameters · 3ce4ed60
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  3ce4ed60
- gtSegmentationBlob2SpotTable : implemented logic of saving difspots in... · 1a62d370
  Laura Nervo authored 11 years ago
  
  gtSegmentationBlob2SpotTable : implemented logic of saving difspots in different sub-directories as '00000' / '10000' / ... with 10000 difspots images each. Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  1a62d370
Oct 07, 2013
- gtMatchInitialize : fixed small bug...concerning saving parameters.mat · aaa9b92b
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  aaa9b92b
- gtMakePoleFigure : if colormap is gray, set lines and text color to black. · 583c195b
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  583c195b
- gtCrystAxisPoles : added 'axesRot' argument to rotate or transform the plane... · 853ce98b
  Laura Nervo authored 11 years ago
  
  gtCrystAxisPoles : added 'axesRot' argument to rotate or transform the plane normal direction before calculating the poles. Commenting and a bit of formatting Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  853ce98b
- gtPrepDefaultParameters : fixed small bug · 4b0ba485
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  4b0ba485
Oct 03, 2013

Using gtCheckParameters in Setup functions... also in gtFillCrystFields and gtMatchInitialize · a23fb544
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
a23fb544

gtCheckParameters : updated finally the running version of checking... · 174ab34c

Laura Nervo authored 11 years ago

gtCheckParameters : updated finally the running version of checking parameters. Possibility to check type of parameters ('default','used','extra','all') using checkType argument.
section_name must be field of parameters
gtModifyStructure : now it handles also usertype and has the freedom to add/remove additional fields to the structure (giving negative usertype)
Added some functions to perform the check.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

174ab34c

Default parameters functions : set structure name with 'par_' in front of the... · 4c2a9e0e

Laura Nervo authored 11 years ago

Default parameters functions : set structure name with 'par_' in front of the section, to avoid matching during the checking

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

4c2a9e0e

gtSetupIndexing : added option to reset all the indexing parameters · 1b291de5
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
1b291de5
gtMatchInitialize : added option to reset all the matching parameters · 210bdc82
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
210bdc82

gtSetupSegmentation,NewSegmentationPreGUI,gtSetupSegmentation_doublethr :... · e650077c

Laura Nervo authored 11 years ago

gtSetupSegmentation,NewSegmentationPreGUI,gtSetupSegmentation_doublethr : added option to reset segmentation values to defaults


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

e650077c

gtPrepDefaultParameters : Added some default parameters for preprocessing · 8787bbc7
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
8787bbc7

gtPreprocessing : stripped out the default values. The calculation or update... · 1200387f

Laura Nervo authored 11 years ago

gtPreprocessing : stripped out the default values. The calculation or update of some prep parameters are done during gtPreprocessing
Added option to reset parameters.prep

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

1200387f

Oct 02, 2013

gtStatus : added flag "completeCheck" to check single types of images even the... · 7154b62c

Laura Nervo authored 11 years ago

gtStatus : added flag "completeCheck" to check single types of images even the preprocessing status seems ok; better commented and separated the single sections; reviewed the part for check fsim and check the reconstruction.

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

7154b62c

gtPreprocessing : better handles check of images in the rawdata folder. · 7a262cd8
Laura Nervo authored 11 years ago
```
gtStatus        : used the same criteria to check images

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
7a262cd8

Replaced gtGetReflections with gtCrystSignedHKLs · a8d3b2ac

Laura Nervo authored 11 years ago

Most of these functions are not used in the code...

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

a8d3b2ac

gtMakePoleFigure : Added options... · 71554aef

Laura Nervo authored 11 years ago

gtMakePoleFigure : Added options 'linecolor','contourline','levels','clim','axesRot','view','debug','tag','fontsize','figname'

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

71554aef

gtFsimCheckMissingGrains : commented header · 927097d7
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
927097d7

gtCrystFindFamilies : using ~isrow() to check reflections format: it should be... · 8ddf7b2b

Laura Nervo authored 11 years ago

gtCrystFindFamilies : using ~isrow() to check reflections format: it should be one reflection each row, but not really confident that it works well

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

8ddf7b2b

gtShowFsim : added output 'grainOut'; changed legend bkg color, indented code,... · 096b152a

Laura Nervo authored 11 years ago

gtShowFsim : added output 'grainOut'; changed legend bkg color, indented code, drawing also w values
TO DO: better code the change of the cmap...it is a bit ugly now, but it works

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

096b152a

General commenting of the headers · d261ba47
Laura Nervo authored 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
d261ba47
gtAnalyseGrainsConflicts : by default fills the filed 'difspotID' in the analyser object · aaeaa667
Laura Nervo authored 11 years ago
```
                           commented the header

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
```
aaeaa667

gtFillCrystFields : fixed name 'cryst.sg' for FABLE calculation of symmetry... · 3b90ae93

Laura Nervo authored 11 years ago

gtFillCrystFields : fixed name 'cryst.sg' for FABLE calculation of symmetry operators instead of 'cryst.opsym', which is filled already using the XOP/Diamond calculation
gtCrystCalculateSymmetryOperators : changed 'opsym' to 'sg' to be consistent with parameters.cryst; changed fields of 'sg' to 'rot' and 'trans' instead of 'sg_rot' and 'sg_trans'
build_list_v2 : updated the default list of parameters

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

3b90ae93

Oct 01, 2013
- gtBrightnessContrast : changed the position of the sliders · c3f260bf
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  c3f260bf
- gtAddMatFile : commented the header · 7255ef1a
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  7255ef1a
- gtPreprocessing : restructured the function using gtPrepDefaultParameters and commenting the header · 82469da8
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  82469da8
Sep 30, 2013
- gtForwardSimulation_v2 : added 'R_vector' and 'spotid' info to output · baee2ea1
  Laura Nervo authored 11 years ago
  
  gtSetupForwardSimulation : fixed OAR jobs display Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  baee2ea1
- initialise_gt : Added to path '7_Fed2' folder · dd924059
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  dd924059
- findValueIntoCell : fixed bug with 'cell2mat' option true · 8632d587
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  8632d587
- GtThreshold : fixed bug with title for GtGauge · cc5c4529
  Laura Nervo authored 11 years ago
  
  GtGauge : fixed bug if no arguments for title Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  cc5c4529
Sep 19, 2013
- gtSetAnalysisDir : fixing bug with replacing '_' with '/' · e43fb26f
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  e43fb26f
Sep 18, 2013
- makeCornerHist : added inputs 'xtitle' 'ytitle' and output 'newFig' · 208dd265
  Laura Nervo authored 11 years ago
  
  errorbar2 : added input 'color' cornerHist : added output 'f' and modified plot settings Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  208dd265
- Commenting and small formatting... · 4ca9e8e1
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  4ca9e8e1
- gtGetReflections : restored previously deleted function (June 2013) still used in the code · 54470a84
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  54470a84
Sep 06, 2013
- get_structure / print_structure : better commented and formatted · 52ebd661
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  52ebd661
- build_list_v2 : added possible needed parameter 'prior_flatfield' as commented for the moment · 7a645947
  Laura Nervo authored 11 years ago
  
  Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>
  7a645947