Commits · 026a8e771596734d936b0635b7407c35c3649653 · graintracking / DCT

Apr 28, 2013

Changed build_list_v2. Text defining the lab coordinate axes are finally in... · 026a8e77

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Changed build_list_v2. Text defining the lab coordinate axes are finally in parameters.labgeo.deflabX,Y,Z (used to be labgeo.definelabX or labgeo.reflabX). They shouldn't affect any funcionality.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@405 4c865b51-4357-4376-afb4-474e03ccb993

026a8e77

Update of segmentation functions to new parameters; cleaning; removed the... · d6e12697

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Update of segmentation functions to new parameters; cleaning; removed the median filter in single thrashold segmentation as it is done in preprocessing

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@404 4c865b51-4357-4376-afb4-474e03ccb993

d6e12697

Segmentation : merging · 32a4a97d

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@403 4c865b51-4357-4376-afb4-474e03ccb993

32a4a97d

Segmentation : fix seg.difspotmask name · 70069d8f

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

Parameters version 2 : fix index.strategy.m.end.angf variable fields

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@402 4c865b51-4357-4376-afb4-474e03ccb993

70069d8f

Update of segmentation parameters; impixelinfo bug fix in gtSetupSegmentation... · d1b7431d

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Update of segmentation parameters; impixelinfo bug fix in gtSetupSegmentation GUIs; cleaning of segmentation functions

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@401 4c865b51-4357-4376-afb4-474e03ccb993

d1b7431d

GtAssemble: fixed summed volume assembling · f3cc55be

Nicola Vigano authored 12 years ago


Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@400 4c865b51-4357-4376-afb4-474e03ccb993

f3cc55be

Updated and cleaned single threshold segmentation to adapt to new parameters. · cd938b76
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@399 4c865b51-4357-4376-afb4-474e03ccb993
```
cd938b76
Indexter: change of default indexing parameters and 'summary' field added to output. · 838d821d
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@398 4c865b51-4357-4376-afb4-474e03ccb993
```
838d821d
fill sample.mat with gtCreateSample instead of gtForwardsimulate_v2 · ed7af35b
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@397 4c865b51-4357-4376-afb4-474e03ccb993
```
ed7af35b

Changed the angular tolerance in gtCrystRodriguesTestCore and the mergeing... · 17f892e9

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Changed the angular tolerance in gtCrystRodriguesTestCore and the mergeing step in Indexter. Updated build_list_v2 accordingly. Removed database call from parfor loopin indexing output. Introduced flag_log in Indexter.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@396 4c865b51-4357-4376-afb4-474e03ccb993

17f892e9

Creating new function for Labgeo default parameters in gtSetup · d1a1ed63

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

Renaming gtLimitsTwoTheta to gtGeoLimitsTwoTheta

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@395 4c865b51-4357-4376-afb4-474e03ccb993

d1a1ed63

Removed unused functions in zUtil_Maths · 42855208

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@394 4c865b51-4357-4376-afb4-474e03ccb993

42855208

Change function from · a1a6acdc

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

params = gtLoadAcquisitionXML(parameters, list, xmlfname, interactive)
to
params_acq = gtLoadAcquisitionXML(acq, list_acq, xmlfname, interactive)

General commenting for the other functions

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@393 4c865b51-4357-4376-afb4-474e03ccb993

a1a6acdc

Change function from · ee6137c9

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

    params = gtLoadAcquisitionXML(parameters, list, xmlfname, interactive)
to
    params_acq = gtLoadAcquisitionXML(acq, list_acq, xmlfname, interactive)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@392 4c865b51-4357-4376-afb4-474e03ccb993

ee6137c9

gtSetup : xml part after creating directories · ef7319e4

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


          creating function fro labgeo default vaues
          parameters.labgeo = gtGeoLabDefaultParameters(parameters.acq)

change function from
[minimum,maximum]=gtLimitsTwoTheta(parameters)
to
[minimum,maximum]=gtGeoLimitsTwoTheta(R, parameters.labgeo.detrefpos, parameters.labgeo.detnorm)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@391 4c865b51-4357-4376-afb4-474e03ccb993

ef7319e4

minor bug in defining parameters.labgeo.detorig · 42729116
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@390 4c865b51-4357-4376-afb4-474e03ccb993
```
42729116
use gtCheckGpu for checking presence of Gpu - modify Astra functions accordingly · 79ad9949
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@389 4c865b51-4357-4376-afb4-474e03ccb993
```
79ad9949

segmentation (double_thr) parameters update · 34aadcdb

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


gtSetup : seg update!

Parameters version 2 : build_list_v2 add comments on parameters sizes

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@388 4c865b51-4357-4376-afb4-474e03ccb993

34aadcdb

Xop : change function argument from · 0a41b4f5

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


[xop,msg] = gtCrystXopInitialize(parameters, material)
[xop,msg] = gtCrystXopInitialize(name, material)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@387 4c865b51-4357-4376-afb4-474e03ccb993

0a41b4f5

gtSetup : general commenting and formatting · cf662ce1

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


          add default values for lab2sam and sam2lab in samgeo
                             for nof_phases in acq
                             for material in cryst

          fix cifname file loading

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@386 4c865b51-4357-4376-afb4-474e03ccb993

cf662ce1

General commenting and better formatting... · be6d9fac

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@385 4c865b51-4357-4376-afb4-474e03ccb993

be6d9fac

Parameters version 2 : Add 'rotcomp' parameters to labgeo in build_list_v2 · 088b89fb
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@384 4c865b51-4357-4376-afb4-474e03ccb993
```
088b89fb
parameters.prep : fix problem with bbox field (everywhere in the code) · 6c3cdb89
Laura Nervo authored 12 years ago and Nicola Vigano committed 11 years ago
```
Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@383 4c865b51-4357-4376-afb4-474e03ccb993
```
6c3cdb89
Bug fix in Indexter not to clear all grainID-s in table before updating. · 8d204f27
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@382 4c865b51-4357-4376-afb4-474e03ccb993
```
8d204f27
fixing multiphase support in gtSetup and Crystallography functions · 980da498
Wolfgang Ludwig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@381 4c865b51-4357-4376-afb4-474e03ccb993
```
980da498

Debugging gtPreprocessing with new dataset... Fixing! · 60ef0b85

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@380 4c865b51-4357-4376-afb4-474e03ccb993

60ef0b85

gtCalculateDist : removing lattice_system calculation · 1b586379

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

(implemented in gtSetup directly)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@379 4c865b51-4357-4376-afb4-474e03ccb993

1b586379

Add 'beamchroma' default value · c9c552db

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@378 4c865b51-4357-4376-afb4-474e03ccb993

c9c552db

zUtil_Csyst : Multi-phases materials implementation · 3fbd7c98

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@377 4c865b51-4357-4376-afb4-474e03ccb993

3fbd7c98

Commenting and formatting... · a0b4a500

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@376 4c865b51-4357-4376-afb4-474e03ccb993

a0b4a500

zUtil_Cryst : calculation of lattice_system · c454fb0f

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@375 4c865b51-4357-4376-afb4-474e03ccb993

c454fb0f

Renaming of gtMatchGUIMain to gtMATCHGUI. Little cleaning in matching. Update... · 53fc5f68

Peter Reischig authored 12 years ago and

Nicola Vigano committed 11 years ago

Renaming of gtMatchGUIMain to gtMATCHGUI. Little cleaning in matching. Update of build_list_v2 and gtSetup with latest matching and indexing parameters. Small modifications in Indexter.

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@374 4c865b51-4357-4376-afb4-474e03ccb993

53fc5f68

Parameters version 2 : Updating the buil_list_v2.m to the current · f8929552

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

parameters.index.strategy version written
in zUtil_Indexter/gtIndexDefaultStrategy.m

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@373 4c865b51-4357-4376-afb4-474e03ccb993

f8929552

Commenting and formatting a little bit ... · 970c7d3b

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago


Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@372 4c865b51-4357-4376-afb4-474e03ccb993

970c7d3b

Parameters version 2 : adding some variable needed for matching · b213b046

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

and segmentation in: acq, match, labgeo

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@371 4c865b51-4357-4376-afb4-474e03ccb993

b213b046

zUtil_Cryst: commenting, formatting · def880e2

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

adding spacegroup 152 to gtCrystSymOpHexagonal

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@370 4c865b51-4357-4376-afb4-474e03ccb993

def880e2

fixed some minor bugs in how non-cubic materials are handled · ad1ebd04
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@369 4c865b51-4357-4376-afb4-474e03ccb993
```
ad1ebd04
Small bug fixes in Indexter. · a0fa58a6
Peter Reischig authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@368 4c865b51-4357-4376-afb4-474e03ccb993
```
a0fa58a6
small fixes to indexter, GtVolView chooses which renderer to use · eb1bbea9
Andrew King authored 12 years ago and Nicola Vigano committed 11 years ago
```
git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@367 4c865b51-4357-4376-afb4-474e03ccb993
```
eb1bbea9

OAR: Commentting the header · 2c6d8c22

Laura Nervo authored 12 years ago and

Nicola Vigano committed 11 years ago

Code formatting("disp" instead of "fprintf" and "sprintf")
Fix in updateOar the deleting of jobs with exit_code 0 (0,0,0)

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@366 4c865b51-4357-4376-afb4-474e03ccb993

2c6d8c22