6D-Twins-datastructures: added a few more fixes

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

zUtil_Deformation/gt6DCreateProjDataFromTwinnedGrainFwdProj.m

@@ -129,7 +129,7 @@ function [samp_ors, estim_space_bbox_pix, estim_orient_bbox] = gt6DCreateProjDat
     ref_included = refgr_proj.included;
     ref_selected = refgr_proj.selected;
 
-    if (conf.verbose > 1 || true)
+    if (conf.verbose > 1)
         produce_matching_reflections_table(grs, conf, refl_matches, ref_ondet, ref_included)
     end
 
@@ -315,7 +315,8 @@ function [samp_ors, estim_space_bbox_pix, estim_orient_bbox] = gt6DCreateProjDat
         proj.centerpix = gr_center_pix;
         proj.bl = blobs;
         proj.stack = spots;
-        vol_size = bbox_size_pix + mean(bbox_size_pix) * 0.3;
+        vol_size = bbox_size_pix;
+%         vol_size = bbox_size_pix + mean(bbox_size_pix) * 0.3;
         proj.vol_size_x = vol_size(2);
         proj.vol_size_y = vol_size(1);
         proj.vol_size_z = vol_size(3);
@@ -358,7 +359,7 @@ function [samp_ors, estim_space_bbox_pix, estim_orient_bbox] = gt6DCreateProjDat
         drawnow();
     end
 
-    if (conf.save)
+    if (conf.save > 0)
         str_ids = sprintf('_%04d', grs_list);
         grain_filename = fullfile(p.acq.dir, '4_grains', ...
             sprintf('phase_%02d', phase_id), ...
@@ -367,12 +368,14 @@ function [samp_ors, estim_space_bbox_pix, estim_orient_bbox] = gt6DCreateProjDat
         save(grain_filename, 'samp_ors', '-v7.3');
         fprintf('\b\b: Done.\n')
 
-        fprintf('Saving to sample.mat..')
-        sample = GtSample.loadFromFile();
-        sample.phases{phase_id}.clusters(end+1) = ...
-            GtPhase.makeCluster(grs_list, cat(1, samp_ors(:).R_vector), estim_space_bbox_pix, [], 1);
-        sample.saveToFile();
-        fprintf('\b\b: Done.\n')
+        if (conf.save == 1)
+            fprintf('Saving to sample.mat..')
+            sample = GtSample.loadFromFile();
+            sample.phases{phase_id}.clusters(end+1) = ...
+                GtPhase.makeCluster(grs_list, cat(1, samp_ors(:).R_vector), estim_space_bbox_pix, [], 1);
+            sample.saveToFile();
+            fprintf('\b\b: Done.\n')
+        end
     end
 end