Small changes (mainly to guiGtMontage)

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

2_difspot/gtReadBlobFromHDF5.m

 function [blob_vol, blob_bb] = gtReadBlobFromHDF5(blob_dir, blob_id)
+% [blob_vol, blob_bb] = gtReadBlobFromHDF5(blob_dir, blob_id)
+
     sub_dir = fullfile(blob_dir, sprintf('%06d', blob_id - mod(blob_id, 1e4)));
     fnameout = fullfile(sub_dir, sprintf('difblob_%06d.hdf5', blob_id) );
     if (isempty(dir(fnameout)))

4_grains/GtThreshold.m

@@ -57,7 +57,7 @@ classdef GtThreshold < handle
                 obj.param.rec.percentile2 = percentile;
 
                 parameters = obj.param;
-                save('parameters.mat', 'parameters');
+                save('parameters.mat', 'parameters', '-v7.3');
             end
 
             if ischar(phaseID)

zUtil_GUI/guiGtMontage.m

@@ -2,21 +2,6 @@ function selected = guiGtMontage(imgStack, selectedImages, spotsIds, omegas, tit
 % GUIGTMONTAGE
 %     selected = guiGtMontage(imgStack, selectedImages, spotsIds, omegas, title)
 %     --------------------------------------------------------------------------
-%
-%      H = GUIGTMONTAGE returns the handle to a new GUIGTMONTAGE or the handle to
-%      the existing singleton*.
-%
-%      GUIGTMONTAGE('CALLBACK',hObject,eventData,handles,...) calls the local
-%      function named CALLBACK in GUIGTMONTAGE.M with the given input arguments.
-%
-%      GUIGTMONTAGE('Property','Value',...) creates a new GUIGTMONTAGE or raises the
-%      existing singleton*.  Starting from the left, property value pairs are
-%      applied to the GUI before guiGtMontage_OpeningFcn gets called.  An
-%      unrecognized property name or invalid value makes property application
-%      stop.  All inputs are passed to guiGtMontage_OpeningFcn via varargin.
-%
-%      *See GUI Options on GUIDE's Tools menu.  Choose "GUI allows only one
-%      instance to run (singleton)".
 %
 
     if (~exist('selectedImages', 'var'))
@@ -33,13 +18,9 @@ function selected = guiGtMontage(imgStack, selectedImages, spotsIds, omegas, tit
     end
 
     if (size(imgStack,2) ~= length(selectedImages))
-        Mexc = MException(  'GUI:wrong_input_args', ...
-                            'Wrong size for selected Images vector');
-        throw(Mexc);
+        error('GUI:wrong_input_args', 'Wrong size for selected Images vector');
     elseif (size(imgStack,2) ~= length(omegas))
-        Mexc = MException(  'GUI:wrong_input_args', ...
-                            'Wrong size of Omegas vector');
-        throw(Mexc);
+        error('GUI:wrong_input_args', 'Wrong size of Omegas vector');
     end
 
     if (~exist('title', 'var'))
@@ -49,7 +30,7 @@ function selected = guiGtMontage(imgStack, selectedImages, spotsIds, omegas, tit
     % Init the GUI
     guiData = guiGtMontage_init(imgStack, selectedImages, spotsIds, omegas, title);
 
-    while 1
+    while (1)
         % Wait for the application to close
         if (guiData.close), break; end
         pause(0.001);
@@ -137,13 +118,14 @@ function selected = guiGtMontage(imgStack, selectedImages, spotsIds, omegas, tit
         % Creates the panels containing the images
         % Sorting by Omegas
         [~, order] = sort(omegas);
+
         for ii = 1:length(selectedImages)
             index = order(ii);
-            img = squeeze(imgStack(:,index,:));
+            img = squeeze(imgStack(:, index, :))';
 
             % hack to make it display the images: may be a matlab bug
             % related to flushing
-            if ii == 1
+            if (ii == 1)
                 imagesc(img, 'parent', ax);
             end
 
@@ -200,9 +182,10 @@ function selected = guiGtMontage(imgStack, selectedImages, spotsIds, omegas, tit
 
     function guiData = createDiffSpotPanel(gui, img, active, ii, num, omega)
     % It creates the panel that contains the difspot.
-        text = sprintf('Spot %d', num);
         if (exist('omega', 'var'))
-            text = sprintf('%s (o: %2.1f)', text, omega);
+            text = sprintf('w: %2.1f, Id: %d', omega, num);
+        else
+            text = sprintf('Id: %d', num);
         end
         panel = uiextras.BoxPanel('Parent', gui.imgs_grid, 'Title', text);