Added IPF normal in phase figure creation

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

zUtil_Deformation/plotting/gt6DMakePhaseFigureForPaper.m

@@ -16,6 +16,7 @@ function gt6DMakePhaseFigureForPaper( phase_mat, phase_id, varargin )
 %
 
     conf = struct( ...
+        'ipf_plane_normal', [], ...
         'use_dmvol', true, ...
         'abs_vol', [], ...
         'abs_mask', [], ...
@@ -37,7 +38,7 @@ function gt6DMakePhaseFigureForPaper( phase_mat, phase_id, varargin )
         r_vecs = reshape(slice_rod, [], 3);
         r_vecs = r_vecs(indx, :);
 
-        cmap = get_cmap(r_vecs, phase_id);
+        cmap = get_cmap(r_vecs, phase_id, conf.ipf_plane_normal);
 
         slice_R = zeros(size(slice_ids));
         slice_G = zeros(size(slice_ids));
@@ -53,7 +54,7 @@ function gt6DMakePhaseFigureForPaper( phase_mat, phase_id, varargin )
         gids(gids < 1) = [];
         r_vecs = sample.phases{phase_id}.R_vector(gids, :);
 
-        cmap = get_cmap(r_vecs, phase_id);
+        cmap = get_cmap(r_vecs, phase_id, conf.ipf_plane_normal);
 
         slice_R = zeros(size(slice_ids));
         slice_G = zeros(size(slice_ids));
@@ -162,13 +163,13 @@ function slice = get_slice(vol, plane, slice_idx)
     end
 end
 
-function cmap = get_cmap(r_vecs, phase_id)
+function cmap = get_cmap(r_vecs, phase_id, ipf_plane_normal)
     p = gtLoadParameters();
     cryst_system = p.cryst(phase_id).crystal_system;
     cryst_spacegroup = p.cryst(phase_id).spacegroup;
     symm = gtCrystGetSymmetryOperators(cryst_system, cryst_spacegroup);
 
-    [cmap, ~, ~] = gtIPFCmap(phase_id, [], ...
+    [cmap, ~, ~] = gtIPFCmap(phase_id, ipf_plane_normal, ...
         'r_vectors', r_vecs, ...
         'crystal_system', cryst_system, ...
         'background', false, ...