sample_shift option during 'volume assemble' step in vizualisation

DCT_Documentation/user_manual/Visualization.tex

@@ -160,3 +160,53 @@ Once it has finished, you are free to Segment and Assemble again.
 If the bounding box seems too small, on the images on the left of the window, the extended reconstruction could be very interesting (with, let's say, 1.5 oversize for each bounding box).
 
 \end{itemize}
+
+\section{Details about assembling}
+
+While assembling the volume, different options are availlable, including rotating and shifting the sample to have it properlly in the field of view.
+
+
+The parameters are :
+\begin{itemize}
+  \item solve\_conflict\_with\_intensity: use the intensity to solve the conflict (no more overlap) (default \textcolor{blue}{false})
+  \item rotation\_axes: the axis of rotation (default \textcolor{blue}{[]})
+  \item rotation\_angles: the rotation angle (default \textcolor{blue}{[]})
+  \item sample\_shift: a shift vector (default \textcolor{blue}{[]})
+\end{itemize}
+
+
+\begin{figure}[!h]
+\centering
+\includegraphics[scale=0.4]{photos/correction-00trans-00rot.png}
+\caption{No option.}
+\end{figure}
+
+\begin{figure}[!h]
+\centering
+\includegraphics[scale=0.4]{photos/correction-00trans-06rot.png}
+\caption{with 6 degrees rotation}
+\end{figure}
+
+\begin{figure}[!h]
+\centering
+\includegraphics[scale=0.4]{photos/correction-50trans-00rot.png}
+\caption{with 50 pixels translation}
+\end{figure}
+
+\begin{figure}[!h]
+\centering
+\includegraphics[scale=0.4]{photos/correction-20trans-07rot.png}
+\caption{with 20 pixels translation and 7 degrees rotation}
+\end{figure}
+
+\begin{figure}[!h]
+\centering
+\includegraphics[scale=0.4]{photos/correction-20trans-07rot-solveconflicts.png}
+\includegraphics[scale=0.4]{photos/correction-20trans-07rot-solveconflicts_pannel.png}
+\caption{with 20 pixels translation and 7 degrees rotation + solve conflict with intensity}
+\end{figure}
+
+
+
+
+