IPF: small change in doc and name for property

Signed-off-by: Nicola Vigano <nicola.vigano@esrf.fr>

zUtil_Deformation/gtReadEBSDMapEulerCTFFile.m

 function [EBSD_e_map, EBSD_r_map, EBSD_mask] = gtReadEBSDMapEulerCTFFile(filename, axes_perm, permute_maps, stretch_axes, phase_id)
-% function [EBSD_e_map, EBSD_r_map] = gtReadEBSDMapEulerCSVFile(filename, axes_perm, permute_maps)
+% function [EBSD_e_map, EBSD_r_map] = gtReadEBSDMapEulerCTFFile(filename, axes_perm, permute_maps, stretch_axes, phase_id)
 %   Axes permutation allows to easily deal with different reference
 %   systems, like for instance:
 %       DCT Axes <-> EBSD Axes ([x y z] <-> [x'y'z'])

zUtil_Deformation/plotting/gt6DMakePhaseFigureForPaper.m

@@ -18,7 +18,7 @@ function gt6DMakePhaseFigureForPaper( phase_mat, phase_id, varargin )
     conf = struct( ...
         'lims_u', [], ...
         'lims_v', [], ...
-        'ipf_plane_normal', [], ...
+        'ipf_axis', [], ...
         'use_dmvol', true, ...
         'abs_vol', [], ...
         'abs_mask', [], ...
@@ -40,7 +40,7 @@ function gt6DMakePhaseFigureForPaper( phase_mat, phase_id, varargin )
         r_vecs = reshape(slice_rod, [], 3);
         r_vecs = r_vecs(indx, :);
 
-        cmap = get_cmap(r_vecs, phase_id, conf.ipf_plane_normal);
+        cmap = get_cmap(r_vecs, phase_id, conf.ipf_axis);
 
         slice_R = zeros(size(slice_ids));
         slice_G = zeros(size(slice_ids));
@@ -56,7 +56,7 @@ function gt6DMakePhaseFigureForPaper( phase_mat, phase_id, varargin )
         gids(gids < 1) = [];
         r_vecs = sample.phases{phase_id}.R_vector(gids, :);
 
-        cmap = get_cmap(r_vecs, phase_id, conf.ipf_plane_normal);
+        cmap = get_cmap(r_vecs, phase_id, conf.ipf_axis);
 
         slice_R = zeros(size(slice_ids));
         slice_G = zeros(size(slice_ids));
@@ -188,13 +188,13 @@ function slice = get_slice(vol, plane, slice_idx)
     end
 end
 
-function cmap = get_cmap(r_vecs, phase_id, ipf_plane_normal)
+function cmap = get_cmap(r_vecs, phase_id, ipf_axis)
     p = gtLoadParameters();
     cryst_system = p.cryst(phase_id).crystal_system;
     cryst_spacegroup = p.cryst(phase_id).spacegroup;
     symm = gtCrystGetSymmetryOperators(cryst_system, cryst_spacegroup);
 
-    [cmap, ~, ~] = gtIPFCmap(phase_id, ipf_plane_normal, ...
+    [cmap, ~, ~] = gtIPFCmap(phase_id, ipf_axis, ...
         'r_vectors', r_vecs, ...
         'crystal_system', cryst_system, ...
         'background', false, ...

zUtil_Deformation/plotting/gt6DRenderEBSDMapIPF.m

@@ -2,7 +2,7 @@ function gt6DRenderEBSDMapIPF(EBSD_r_map, phase_id, varargin)
 
     conf = struct( ...
         'mask', [], ...
-        'ipf_plane_normal', [], ...
+        'ipf_axis', [], ...
         'flip_ud', false, ...
         'flip_lr', false, ....
         'clims', [], ...
@@ -35,7 +35,7 @@ function gt6DRenderEBSDMapIPF(EBSD_r_map, phase_id, varargin)
     r_vecs = reshape(EBSD_r_map, [], 3);
     r_vecs = r_vecs(indx, :);
 
-    cmap = get_cmap(r_vecs, phase_id, conf.ipf_plane_normal);
+    cmap = get_cmap(r_vecs, phase_id, conf.ipf_axis);
 
     slice_R = zeros(size(slice_ids));
     slice_G = zeros(size(slice_ids));
@@ -108,13 +108,13 @@ function gt6DRenderEBSDMapIPF(EBSD_r_map, phase_id, varargin)
     end
 end
 
-function cmap = get_cmap(r_vecs, phase_id, ipf_plane_normal)
+function cmap = get_cmap(r_vecs, phase_id, ipf_axis)
     p = gtLoadParameters();
     cryst_system = p.cryst(phase_id).crystal_system;
     cryst_spacegroup = p.cryst(phase_id).spacegroup;
     symm = gtCrystGetSymmetryOperators(cryst_system, cryst_spacegroup);
 
-    [cmap, ~, ~] = gtIPFCmap(phase_id, ipf_plane_normal, ...
+    [cmap, ~, ~] = gtIPFCmap(phase_id, ipf_axis, ...
         'r_vectors', r_vecs, ...
         'crystal_system', cryst_system, ...
         'background', false, ...

zUtil_TomoUtils/GtEBSDView.m

@@ -13,7 +13,7 @@ classdef GtEBSDView < GtBaseGuiElem
 
             self.conf.ebsd_map = ebsd_map;
             self.conf.mask = [];
-            self.conf.ipf_plane_normal = [];
+            self.conf.ipf_axis = [];
             self.conf.phase_id = 1;
 
             self.conf.horDim = 1;
@@ -265,7 +265,7 @@ classdef GtEBSDView < GtBaseGuiElem
             r_vecs = r_vecs(indx, :);
 
             [cmap, ~, ~] = gtIPFCmap( ...
-                self.conf.phase_id, self.conf.ipf_plane_normal, ...
+                self.conf.phase_id, self.conf.ipf_axis, ...
                 'r_vectors', r_vecs, ...
                 'crystal_system', cryst_system, ...
                 'background', false, ...