gtForwardSimulate_v2 : add 'save_grain' flag to save or not the grain_###.mat

                       default is 'true'

Signed-off-by: Laura Nervo <laura.nervo@esrf.fr>

git-svn-id: https://svn.code.sf.net/p/dct/code/trunk@835 4c865b51-4357-4376-afb4-474e03ccb993

5_reconstruction/gtForwardSimulate_v2.m

@@ -12,6 +12,7 @@ function out = gtForwardSimulate_v2(first, last, workingdirectory, phaseID, vara
 %     OPTIONAL INPUT (varargin):
 %       bb_size         = <int>     size of search area  ([] will use default projection size)
 %       assemble_figure = <logical> collects all difspots and assembles them into a fullimage
+%       save_grain      = <logical> flag to save grain_###.mat {true}
 %
 %     OUTPUT:
 %       out  = updated grain structure <struct>
@@ -60,6 +61,10 @@ else
     fsim = gtFsimDefaultParameters();
 end
 
+if ~isfield(fsim, 'save_grain')
+    fsim.save_grain = true;
+end
+
 if ~exist('phaseID','var') || isempty(phaseID)
     phaseID = 1;
 end
@@ -492,9 +497,11 @@ for n = first : last
     end
 
 
-    filename = fullfile(acq.dir, '4_grains', sprintf('phase_%02d',phaseID), ...
-                        sprintf('grain_%04d.mat', gr.id));
-    save(filename, '-struct', 'out');
+    if fsim.save_grain
+        filename = fullfile(acq.dir, '4_grains', phaseID_str, ...
+                            sprintf('grain_%04d.mat', gr.id));
+        save(filename, '-struct', 'out');
+    end
     
     spot2grain(spotid(included)) = {n};
     spot2phase(spotid(included)) = {phaseID};

5_reconstruction/gtFsimDefaultParameters.m

@@ -14,5 +14,6 @@ fsim.use_th          = true;      % use theoretically predicted diffraction angl
 fsim.verbose         = false;     % tell which search criteria has failed
 fsim.selected        = 4;         % Spots preselected for reconstruction have flag >= 5
 fsim.included        = 4;         % Spots included into projection stack  (can be selected manually)
+fsim.save_grain      = true;      % flag to save grain_####.mat files
 
 end

zUtil_Parameters/build_list_v2.m

@@ -8,6 +8,9 @@ function list = build_list_v2()
 %     OUTPUT:
 %       list = structure with each field <cell> (N,3)
 %
+%     Version 005 04-10-2012 by LNervo
+%       Add 'fsim.save_grain'
+%
 %     Version 004 12-06-2012 by LNervo
 %       Add forth column for user flag: 0:not display, 1:basic, 2:expert
 %
@@ -711,6 +714,9 @@ list.fsim{13,1} = 'included';                          list.fsim{13,2} = 'Difspo
 list.fsim{14,1} = 'selected';                          list.fsim{14,2} = 'Difspots with flag >= selected be used for reconstruction';                                                       
                                                        list.fsim{14,3} = 'double'; % scalar
                                                        list.fsim{14,4} = 2;
+list.fsim{15,1} = 'save_grain';                        list.fsim{15,2} = 'Flag to save grain_####.mat files';                                                       
+                                                       list.fsim{15,3} = 'logical';
+                                                       list.fsim{15,4} = 2;
 
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%