Code formatting in gtCopyDataForTest

Signed-off-by: Yoann Guilhem <yoann.guilhem@esrf.fr>

zUtil_Help/gtCopyDataForTest.m

@@ -27,10 +27,10 @@ if ~exist('newdir', 'var') || isempty(newdir)
 end
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% directories
+% Directories
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-disp('Creating the directories...')
-if exist(fullfile(newdir, new_pattern),'dir')
+disp('Creating the new dataset directories...');
+if exist(fullfile(newdir, new_pattern), 'dir')
     gtError('gtCopyDataForTest:wrong_directory', ...
         'New directory already exists. Please check the directory name.');
 elseif ~exist(newdir, 'dir')
@@ -41,11 +41,11 @@ end
 [~, msg] = mkdir(fullfile(newdir, new_pattern, '0_rawdata', 'Orig')); disp(msg);
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% images
+% Images
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
-% copying data
-disp('Copying the images...')
+% Copying data
+disp('Copying and the images to the new directory...');
 copyfile(fullfile(workdir, old_pattern, '0_rawdata', 'Orig', '*.edf'), ...
          fullfile(newdir,  new_pattern, '0_rawdata', 'Orig'), 'f');
 
@@ -53,10 +53,10 @@ disp('Copying the info file...');
 copyfile(fullfile(workdir, old_pattern, '0_rawdata', 'Orig', '*.info'), ...
          fullfile(newdir,  new_pattern, '0_rawdata', 'Orig'), 'f');
 
-olddir=pwd;
+olddir = pwd;
 
 % Set path to tomo_utils.py script
-global GT_MATLAB_HOME
+global GT_MATLAB_HOME;
 tomoUtilsScript = fullfile( GT_MATLAB_HOME, 'zUtil_Python', 'tomo_utils.py');
 
 % Enter old dataset Orig directopy
@@ -68,47 +68,43 @@ is_interlaced = exist([old_pattern '0_0000.edf'], 'file');
 disp('Renaming the images...');
 filenames = [old_pattern '*.edf'];
 if (is_interlaced)
-    image_old=[old_pattern '0_'];
-    image_new=[new_pattern '0_'];
+    image_old = [old_pattern '0_'];
+    image_new = [new_pattern '0_'];
     cmd = [tomoUtilsScript ...
          ' -rename ''' filenames ''' ''' image_old ''' ''' image_new ''''];
-    [s, msg] = gtPythonCommand(cmd);
-    disp(msg);
-    image_old=[old_pattern '1_'];
-    image_new=[new_pattern '1_'];
+    [~, msg] = gtPythonCommand(cmd); disp(msg);
+    image_old = [old_pattern '1_'];
+    image_new = [new_pattern '1_'];
     cmd = [tomoUtilsScript ...
          ' -rename ''' filenames ''' ''' image_old ''' ''' image_new ''''];
-    [s, msg] = gtPythonCommand(cmd);
-    disp(msg);
+    [~, msg] = gtPythonCommand(cmd); disp(msg);
 else
-    cmd=[tomoUtilsScript ...
+    cmd = [tomoUtilsScript ...
          ' -rename ''' filenames ''' ''' old_pattern ''' ''' new_pattern ''''];
-    [s, msg] = gtPythonCommand(cmd);
-    disp(msg);
+    [~, msg] = gtPythonCommand(cmd); disp(msg);
 end
 
 cd(olddir);
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% copying xml file
+% Copying xml file
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
-disp('Copying the xml file...')
+disp('Copying the xml file...');
 %xmlold = fullfile(workdir, old_pattern, '0_rawdata', old_pattern, [old_pattern '.xml']);
 xmlold = fullfile(workdir, old_pattern, '0_rawdata', 'Orig', [old_pattern '.xml']);
 xmlnew = fullfile(newdir, new_pattern, '0_rawdata', 'Orig', [new_pattern '.xml']);
-copyfile(xmlold,xmlnew,'f');
+copyfile(xmlold, xmlnew, 'f');
 
-% changing fields in xml file
-% disp('Renaming fields in the xml file...')
+disp('Renaming scan name field in the xml file...');
 cmd = ['sed -i -e "s/' old_pattern '/' new_pattern '/g " ' xmlnew];
-[s,msg] = unix(cmd); disp(msg)
+[~, msg] = unix(cmd); disp(msg);
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 % Header information
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% copy *.xml file to *dct_.xml adding some information from headers of
-% ref0000_0000.edf and darkend0000.xml images
+% Copy *.xml file to *dct_.xml adding some information from headers of
+% ref0000_0000.edf and darkend0000.edf images
 
 wd = pwd;
 cd(fullfile(newdir, new_pattern, '0_rawdata', 'Orig'));
@@ -118,9 +114,7 @@ gtUpdateXmlFile();
 cd(wd);
 
 % copy DB tables and values 
-gtDBCopyAllTables(old_pattern,new_pattern);
-gtDBCreateSpotPairTable(new_pattern,1);
-
-end
-
+gtDBCopyAllTables(old_pattern, new_pattern);
+gtDBCreateSpotPairTable(new_pattern, 1);
 
+end % end of function