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# -*- coding: utf-8 -*-
#
# This file is part of the bliss project
#
# Copyright (c) 2016 Beamline Control Unit, ESRF
# Distributed under the GNU LGPLv3. See LICENSE for more info.
'''
Biologic potentiostat module
Example::
>>> from bliss.controllers.potentiostat.biologic import Potentiostat
>>> p = Potentiostat('192.109.209.128')
>>> # device information
>>> print(p.info)
DeviceInfo:
DeviceType = DeviceType.SP50
RAMsize = 32
CPU = 9200
NumberOfChannels = ...
>>> # list of plugged channels
>>> p.get_channels_plugged()
set([0])
>>> # make sure channel 0 is installed
>>> p.is_channel_plugged(0)
True
>>> # show current values of channel 0
>>> print(p.get_current_values(0))
CurrentValues:
State = STOP
MemFilled = 0
Ewe = -0.007
I = 0.0
Freq = ...
>>> # load OCV technique into channel 0
>>> from bliss.controllers.potentiostat.biologic import VoltageRange
>>> from bliss.controllers.potentiostat.biologic.techniques import OCV
>>> ocv = OCV(OCV.Rest_time_T(0.1, 0),
... OCV.Record_every_dE(0.1, 0),
... OCV.Record_every_dT(0.01, 0),
... OCV.E_Range(VoltageRange.AUTO))
>>> self.p.load_technique(0, ocv)
'''
__all__ = ['PID', 'DeviceInfo', 'ChannelInfo', 'CurrentValues',
'DataInfo', 'HardwareConf', 'TechniqueInfo',
'ExperimentInfo', 'DeviceType', 'VMP3_SERIES', 'VMP4_SERIES',
'SP_300_SERIES', 'Instrument', 'Technique', 'Parameter']
import os
import sys
import ctypes
import struct
import inspect
import logging
import functools
import collections
from enum import Enum
from ctypes import (c_int16, c_uint16, c_int32, c_uint32, c_int64, c_uint64,
c_int8, c_uint8, c_float, c_double, c_bool, c_ubyte, c_char, c_char_p,
Structure, byref, pointer, POINTER, create_string_buffer)
try:
from collections import OrderedDict
except AttributeError:
from ordereddict import OrderedDict
import numpy
from bliss.common.utils import API
c_uint8_p = POINTER(c_uint8)
c_uint16_p = POINTER(c_uint16)
c_uint32_p = POINTER(c_uint32)
c_uint64_p = POINTER(c_uint64)
c_int8_p = POINTER(c_int8)
c_int16_p = POINTER(c_int16)
c_int32_p = POINTER(c_int32)
c_int64_p = POINTER(c_int64)
_this_dir, _name = os.path.split(os.path.realpath(__file__))
_name, _ = os.path.splitext(_name)
_log = logging.getLogger(_name)
_is_32 = (8 * struct.calcsize('P')) == 32
_PY3 = sys.version_info[0] > 2
def NamedTuple(*args, **kwargs):
r = collections.namedtuple(*args, **kwargs)
def s(self):
n = max(map(len, self._fields))
T = '{{0: >{0}}} = {{1}}'.format(n)
fields = '\n'.join([T.format(k, getattr(self, k)) for k in self._fields])
return '{0}:\n{1}'.format(self.__class__.__name__, fields)
r.__str__ = s
return r
#: potentiostat identification
PID = NamedTuple('PID', 'ID dev_info url')
# Note on the need for following functions: We could have just done
# something like:
# eclib = LoadLibrary('eclib.dll')
# The problem that if the library is not present or we are not under
# windows, the generation of documentation would fail since the module
# could not be loaded. The functions allow for a *lazy* load and
# initialization of the biologic DLLs
def __get_lib(name):
if not _is_32:
name += '64'
lib_path = os.path.join(_this_dir, name)
return ctypes.WinDLL(lib_path)
def __init_eclib(c_eclib):
# General functions
c_eclib.BL_GetLibVersion.argtypes = [c_char_p, c_uint32_p]
c_eclib.BL_GetLibVersion.restype = c_int32
c_eclib.BL_GetVolumeSerialNumber.restype = c_uint32
c_eclib.BL_GetErrorMsg.argtypes = [c_int32, c_char_p, c_uint32_p]
c_eclib.BL_GetErrorMsg.restype = c_int32
# Communication functions
c_eclib.BL_Connect.argtypes = [c_char_p, c_uint8, c_int32_p, _DeviceInfo_p]
c_eclib.BL_Connect.restype = c_int32
c_eclib.BL_Disconnect.argtypes = [c_int32]
c_eclib.BL_Disconnect.restype = c_int32
c_eclib.BL_TestConnection.argtypes = [c_int32]
c_eclib.BL_TestConnection.restype = c_int32
c_eclib.BL_TestCommSpeed.argtypes = [c_int32, c_uint8, c_int32_p, c_int32_p]
c_eclib.BL_TestCommSpeed.restype = c_int32
c_eclib.BL_GetUSBdeviceinfos.argtypes = [c_uint32, c_char_p, c_uint32_p, c_char_p, c_uint32_p, c_char_p, c_uint32_p]
c_eclib.BL_GetUSBdeviceinfos.restype = c_bool
# Firmware functions
c_eclib.BL_LoadFirmware.argtypes = [c_int32, c_uint8_p, c_int32_p, c_uint8,
c_bool, c_bool, c_char_p, c_char_p]
c_eclib.BL_LoadFirmware.restype = c_int32
# Channel information functions
c_eclib.BL_IsChannelPlugged.argtypes = [c_int32, c_uint8]
c_eclib.BL_IsChannelPlugged.restype = c_bool
c_eclib.BL_GetChannelsPlugged.argtypes = [c_int32, c_uint8_p, c_uint8]
c_eclib.BL_GetChannelsPlugged.restype = c_int32
c_eclib.BL_GetChannelInfos.argtypes = [c_int32, c_uint8, _ChannelInfo_p]
c_eclib.BL_GetChannelInfos.restype = c_int32
# Technique functions
c_eclib.BL_DefineBoolParameter.argtypes = [c_char_p, c_bool, c_int32, _EccParam_p]
c_eclib.BL_DefineBoolParameter.restype = c_int32
c_eclib.BL_DefineSglParameter.argtypes = [c_char_p, c_float, c_int32, _EccParam_p]
c_eclib.BL_DefineSglParameter.restype = c_int32
c_eclib.BL_DefineIntParameter.argtypes = [c_char_p, c_int32, c_int32, _EccParam_p]
c_eclib.BL_DefineIntParameter.restype = c_int32
c_eclib.BL_LoadTechnique.argtypes = [c_int32, c_uint8, c_char_p, _EccParams, c_bool, c_bool, c_bool]
c_eclib.BL_LoadTechnique.restype = c_int32
# Start/stop functions
# Data functions
c_eclib.BL_GetCurrentValues.argtypes = [c_int32, c_uint8, _CurrentValues_p]
c_eclib.BL_GetCurrentValues.restype = c_int32
# Miscellaneous functions
c_eclib.BL_SetExperimentInfos.argtypes = [c_int32, c_uint8, _ExperimentInfo]
c_eclib.BL_SetExperimentInfos.restype = c_int32
__ECLIB = None
def eclib():
global __ECLIB
if not __ECLIB:
__ECLIB = __get_lib('eclib')
__init_eclib(__ECLIB)
return __ECLIB
def __init_blfind(c_blfind):
c_blfind.BL_FindEChemDev.argtypes = [c_char_p, c_uint32_p, c_uint32_p]
c_blfind.BL_FindEChemDev.restype = c_int32
c_blfind.BL_FindEChemEthDev.argtypes = [c_char_p, c_uint32_p, c_uint32_p]
c_blfind.BL_FindEChemEthDev.restype = c_int32
c_blfind.BL_FindEChemUsbDev.argtypes = [c_char_p, c_uint32_p, c_uint32_p]
c_blfind.BL_FindEChemUsbDev.restype = c_int32
__BLFIND = None
def blfind():
global __BLFIND
if not __BLFIND:
__BLFIND = __get_lib('blfind')
__init_blfind(__BLFIND)
return __BLFIND
def __struct_to_namedtuple_type(struct_class):
# convert a ctypes.Structure to a namedtuple
ret = NamedTuple(struct_class.__name__[1:], zip(*struct_class._fields_)[0])
if _PY3:
ret.__doc__ = s.__doc__
return ret
def __struct_to_namedtuple(struct, ntuple_type=None):
# convert a ctypes.Structure instance to a namedtuple instance. If
# ntuple_type is None, it tries to find in globals a namedtuple with the
# name of s[1:], if s starts with '_' otherwise throws ValueError
if ntuple_type is None:
struct_name = struct.__class__.__name__
if not struct_name.startswith('_'):
raise ValueError('Cannot determine namedtuple name from structure ' \
'name {0}'.format(struct_name))
ntuple_type = globals()[struct_name[1:]]
kwargs = dict([(k, getattr(struct, k)) for k, _ in struct._fields_])
return ntuple_type(**kwargs)
def __struct_to_dict(struct):
fields = struct.__class__._fields_
return dict([(name, getattr(struct, name)) for name, _ in fields])
def __namedtuple_to_struct(ntuple, struct_class=None):
if struct_class is None:
ntuple_name = ntuple.__class__.__name__
if not ntuple_name.startswith('_'):
raise ValueError('Cannot determine structure name from ' \
'namedtuple name {0}'.format(struct_name))
struct_class = globals()['_' + ntuple_name]
return struct_class(*ntuple)
def stringify_struct(k):
M = max(map(len, [f[0] for f in k._fields_]))
msg = '{{0: >{0}}} = {{1}}'.format(M)
cname = k.__name__
def s(self):
f = [msg.format(name, getattr(self, name)) for name, _ in self._fields_]
return '{0}:\n{1}'.format(cname, '\n'.join(f))
k.__str__ = s
return k
@stringify_struct
class _DeviceInfo(Structure):
'''
Information about the device that :func:`connect` connected to.
'''
_fields_ = [
('DeviceCode', c_int32), # Device code
('RAMsize', c_int32), # RAM size, in MBytes
('CPU', c_int32), # Computer board cpu
('NumberOfChannels', c_int32), # Number of channels connected
('NumberOfSlots', c_int32), # Number of slots available
('FirmwareVersion', c_int32), # Communication firmware version
('FirmwareDate_yyyy', c_int32), # Communication firmware date YYYY
('FirmwareDate_mm', c_int32), # Communication firmware date MM
('FirmwareDate_dd', c_int32), # Communication firmware date DD
('HTdisplayOn', c_int32), # Allow hyper-terminal prints (true/false)
('NbOfConnectedPC', c_int32), # Number of connected PC
]
_DeviceInfo_p = POINTER(_DeviceInfo)
DeviceInfo = __struct_to_namedtuple_type(_DeviceInfo)
@stringify_struct
class _ChannelInfo(Structure):
'''
Information about the channel. You can obtain them using
:func:`get_channel_info`
'''
_fields_ = [
('Channel', c_int32), # Channel (0..15)
('BoardVersion', c_int32), # Board version
('BoardSerialNumber', c_int32), # Board serial number
('FirmwareCode', c_int32), # Firmware loaded (see FirmwareCode)
('FirmwareVersion', c_int32), # Firmware version
('XilinxVersion', c_int32), # Xilinx version
('AmpCode', c_int32), # Amplifier code (see AmplifierType)
('NbAmps', c_int32), # Number of amplifiers
('Lcboard', c_int32), # Low current board present (true/false)
('Zboard', c_int32), # true if the channel has impedance measurement capability
('RESERVED', c_int32), # not used
('RESERVED2', c_int32), # not used
('MemSize', c_int32), # Memory size (in bytes)
('MemFilled', c_int32), # Memory filled (in bytes)
('State', c_int32), # Channel State (see ChannelState)
('MaxIRange', c_int32), # Maximum I range allowed (IntensityRange)
('MinIRange', c_int32), # Minimum I range allowed (IntensityRange)
('MaxBandwidth', c_int32), # Maximum bandwidth allowed (Bandwidth)
('NbOfTechniques', c_int32), # Number of techniques loaded
]
_ChannelInfo_p = POINTER(_ChannelInfo)
ChannelInfo = __struct_to_namedtuple_type(_ChannelInfo)
@stringify_struct
class _CurrentValues(Structure):
'''
Information about the channel current values measurement.
'''
_fields_ = [
('State', c_int32), # Channel state: see ChannelState
('MemFilled', c_int32), # Memory filled (in Bytes)
('TimeBase', c_float), # Time base (s)
('Ewe', c_float), # Working electrode potential (V)
('EweRangeMin', c_float), # Ewe min range (V)
('EweRangeMax', c_float), # Ewe max range (V)
('Ece', c_float), # Counter electrode potential (V)
('EceRangeMin', c_float), # Ece min range (V)
('EceRangeMax', c_float), # Ece max range (V)
('Eoverflow', c_int32), # Potential overflow
('I', c_float), # Current value (A)
('IRange', c_int32), # Current range (see IntensityRange)
('Ioverflow', c_int32), # Current overflow
('ElapsedTime', c_float), # Elapsed time (s)
('Freq', c_float), # Frequency (Hz)
('Rcomp', c_float), # R compensation (Ohm)
('Saturation', c_int32), # E or/and I saturation
('OptErr', c_int32), # Hardware option error code (see ErrorCodes, SP-300 series only)
('OptPos', c_int32), # Index of the option generating the OptErr (SP-300 series only)
]
_CurrentValues_p = POINTER(_CurrentValues)
CurrentValues = __struct_to_namedtuple_type(_CurrentValues)
@stringify_struct
class _DataInfo(Structure):
'''
Holds metadata about the data you just received with :func:`get_data`
'''
_fields_ = [
('IRQskipped', c_int32), # Number of IRQ skipped
('NbRows', c_int32), # Number of rows into the data buffer, i.e.number of points saved in the data buffer
('NbCols', c_int32), # Number of columns into the data buffer, i.e. number of variables defining a po('in the data buffer
('TechniqueIndex', c_int32), # Index (0-based) of the technique who has generated the data. This field is only useful for linked techniques
('TechniqueID', c_int32), # Identifier of the technique who has generated the data. Must be used to identify the data format into the data buffer (see TechniqueIdentifier )
('ProcessIndex', c_int32), # Index (0-based) of the process of the technique who has generated the data. Must be used to identify the data format into the data buffer
('loop', c_int32), # Loop number
('StartTime', c_double), # Start time (s)
('MuxPad', c_int32), # Active MP-MEA option pad number (SP-300 series only)
]
_DataInfo_p = POINTER(_DataInfo)
DataInfo = __struct_to_namedtuple_type(_DataInfo)
_DataBuffer = 1000 * c_uint32
_DataBuffer_p = POINTER(_DataBuffer)
@stringify_struct
class _EccParam(Structure):
'''
Defines an elementary technique parameter and is used by
:func:`load_technique`
'''
_fields_ = [
('ParamStr', 64*c_char), # (len=64) string who defines the parameter
# label (see section 7. Techniques in PDF for
# a complete description of parameters available
# for each technique)
('ParamType', c_int32), # Parameter type (see ParamType)
('ParamVal', c_int32), # Parameter value. \warning Numerical value
('ParamIndex', c_int32), # Parameter index (0-based), useful for multi-step parameters. Otherwise should be 0.
]
_EccParam_p = POINTER(_EccParam)
@stringify_struct
class _EccParams(Structure):
'''
Defines an array of elementary technique parameters and is used by
:func:`load_technique`
'''
_fields_ = [
('len', c_int32), # Length of the array pointed by pParams
('pParams', _EccParam_p), # Pointer on the array of technique parameters (array of structure EccParam)
]
_EccParams_p = POINTER(_EccParams)
@stringify_struct
class _HardwareConf(Structure):
'''
Describes the channel electrode configuration.
See :func:`get_hard_conf` and :func:`set_hard_conf`
'''
_fields_ = [
('Conn', c_int32), # Electrode connection (see ElectrodeConn)
('Ground', c_int32), # Instrument ground (see ElectrodeMode)
]
_HardwareConf_p = POINTER(_HardwareConf)
HardwareConf = __struct_to_namedtuple_type(_HardwareConf)
@stringify_struct
class _TechniqueInfo(Structure):
'''Technique information'''
_fields_ = [
('id', c_int32), # technique id
('indx', c_int32), # index of the technique
('nbParams', c_int32), # number of parameters
('nbSettings', c_int32), # number of hardware settings
('Params', _EccParam_p), # pointer to the parameters
('HardSettings', _EccParam_p), # pointer to the hardware settings
]
_TechniqueInfo_p = POINTER(_TechniqueInfo)
TechniqueInfo = __struct_to_namedtuple_type(_TechniqueInfo)
@stringify_struct
class _ExperimentInfo(Structure):
'''Experiment informations'''
_fields_ = [
('Group', c_int32),
('PCidentifier', c_int32),
('TimeHMS', c_int32),
('TimeYMD', c_int32),
('Filename', 256*c_char),
]
_ExperimentInfo_p = POINTER(_ExperimentInfo)
ExperimentInfo = __struct_to_namedtuple_type(_ExperimentInfo)
@API
class DeviceType(Enum):
'''Device type'''
VMP = 0 #: VMP device
VMP2 = 1 #: VMP2 device
MPG = 2 #: MPG device
BISTAT = 3 #: BISTAT device
MCS_200 = 4 #: MCS-200 device
VMP3 = 5 #: VMP3 device
VSP = 6 #: VSP device
HCP803 = 7 #: HCP-803 device
EPP400 = 8 #: EPP-400 device
EPP4000 = 9 #: EPP-4000 device
BISTAT2 = 10 #: BISTAT 2 device
FCT150S = 11 #: FCT-150S device
VMP300 = 12 #: VMP-300 device
SP50 = 13 #: SP-50 device
SP150 = 14 #: SP-150 device
FCT50S = 15 #: FCT-50S device
SP300 = 16 #: SP300 device
CLB500 = 17 #: CLB-500 device
HCP1005 = 18 #: HCP-1005 device
CLB2000 = 19 #: CLB-2000 device
VSP300 = 20 #: VSP-300 device
SP200 = 21 #: SP-200 device
MPG2 = 22 #: MPG2 device
ND1 = 23 #: RESERVED
ND2 = 24 #: RESERVED
ND3 = 25 #: RESERVED
ND4 = 26 #: RESERVED
SP240 = 27 #: SP-240 device
MPG205 = 28 #: MPG-205 (VMP3)
MPG210 = 29 #: MPG-210 (VMP3)
MPG220 = 30 #: MPG-220 (VMP3)
MPG240 = 31 #: MPG-240 (VMP3)
UNKNOWN = 255 #: Unknown device
for i in range(32,255):
setattr(DeviceType, 'UNSUPPORTED_{0}'.format(i), i)
VMP3_SERIES = set((DeviceType.VMP2, DeviceType.VMP3, DeviceType.BISTAT,
DeviceType.VSP, DeviceType.SP50, DeviceType.SP150,
DeviceType.MPG2, DeviceType.HCP803))
VMP4_SERIES = set((DeviceType.SP200, DeviceType.SP240, DeviceType.SP300,
DeviceType.VSP300, DeviceType.VMP300))
SP_300_SERIES = set((DeviceType.SP200, DeviceType.SP240, DeviceType.SP300))
@API
class FirmwareCode(Enum):
'''Firmware code'''
NONE = 0 #: No firmware loaded
INTERPR = 1 #: Firmware for EC-Lab software
UNKNOWN = 4 #: Unknown firmware loaded
KERNEL = 5 #: Firmware for the library
INVALID = 8 #: Invalid firmware loaded
ECAL = 10 #: Firmware for calibration software
@API
class AmplifierType(Enum):
'''Amplifier type'''
VMP3_NONE = 0 #: No amplifier VMP3 series
VMP3_2A = 1 #: Amplifier 2 A VMP3 series
VMP3_1A = 2 #: Amplifier 1 A VMP3 series
VMP3_5A = 3 #: Amplifier 5 A VMP3 series
VMP3_10A = 4 #: Amplifier 10 A VMP3 series
VMP3_20A = 5 #: Amplifier 20 A VMP3 series
VMP3_HEUS = 6 #: reserved VMP3 series
VMP3_LC = 7 #: Low current amplifier VMP3 series
VMP3_80A = 8 #: Amplifier 80 A VMP3 series
VMP3_4AI = 9 #: Amplifier 4 A VMP3 series
VMP3_PAC = 10 #: Fuel Cell Tester VMP3 series
VMP3_4AI_VSP = 11 #: Amplifier 4 A (VSP instrument) VMP3 series
VMP3_LC_VSP = 12 #: Low current amplifier (VSP instrument) VMP3 series
VMP3_UNDEF = 13 #: Undefined amplifier VMP3 series
VMP3_MUIC = 14 #: reserved VMP3 series
VMP3_NONE_GIL = 15 #: No amplifier VMP3 series
VMP3_8AI = 16 #: Amplifier 8 A VMP3 series
VMP3_LB500 = 17 #: Amplifier LB500 VMP3 series
VMP3_100A5V = 18 #: Amplifier 100 A VMP3 series
VMP3_LB2000 = 19 #: Amplifier LB2000 VMP3 series
_1A48V = 20 #: Amplifier 1A 48V SP-300 series
_4A10V = 21 #: Amplifier 4A 10V SP-300 series
_5A_MPG2B = 22 #: MPG-205 5A amplifier
_10A_MPG2B = 23 #: MPG-210 10A amplifier
_20A_MPG2B = 24 #: MPG-220 20A amplifier
_40A_MPG2B = 25 #: MPG-240 40A amplifier
COIN_CELL_HOLDER = 26 #: coin cell holder
VMP4_10A5V = 27 #: VMP4 10A/5V amplifier (SP-300 internal amplifier)
VMP4_2A30V = 28 #: VMP4 2A/30V
@API
class IntensityRange(Enum):
'''Intensity range'''
_100pA = 0 #: I range 100 pA SP-300 series
_1nA = 1 #: I range 1 nA VMP3 / SP-300 series
_10nA = 2 #: I range 10 nA VMP3 / SP-300 series
_100nA = 3 #: I range 100 nA VMP3 / SP-300 series
_1uA = 4 #: I range 1 uA VMP3 / SP-300 series
_10uA = 5 #: I range 10 uA VMP3 / SP-300 series
_100uA = 6 #: I range 100 uA VMP3 / SP-300 series
_1mA = 7 #: I range 1 mA VMP3 / SP-300 series
_10mA = 8 #: I range 10 mA VMP3 / SP-300 series
_100mA = 9 #: I range 100 mA VMP3 / SP-300 series
_1A = 10 #: I range 1 A VMP3 / SP-300 series
BOOSTER = 11 #: Booster VMP3 / SP-300 series
AUTO = 12 #: Auto range VMP3 / SP-300 series
_10pA = 13 #: IRANGE_100pA + Igain x10
_1pA = 14 #: IRANGE_100pA + Igain x100
@API
class OptionError(Enum):
'''Option error codes'''
NOERR = 0 #: Option no error
CHANGE = 1 #: Option change
_4A10V_ERR = 100 #: Amplifier 4A10V error
_4A10V_OVRTEMP = 101 #: Amplifier 4A10V overload temperature
_4A10V_BADPOW = 102 #: Amplifier 4A10V invalid power
_4A10V_POWFAIL = 103 #: Amplifier 4A10V power fail
_1A48V_ERR = 200 #: Amplifier 1A48V error
_1A48V_OVRTEMP = 201 #: Amplifier 1A48V overload temperature
_1A48V_BADPOW = 202 #: Amplifier 1A48V invalid power
_1A48V_POWFAIL = 203 #: Amplifier 1A48V power fail
_10A5V_ERR = 300 #: Amplifier 10A5V error
_10A5V_OVRTEMP = 301 #: Amplifier 10A5V overload temperature
_10A5V_BADPOW = 302 #: Amplifier 10A5V invalid power
_10A5V_POWFAIL = 303 #: Amplifier 10A5V power fail
@API
class VoltageRange(Enum):
'''Voltage range'''
_2_5 = 0 # +/- 2.5 V
_5 = 1 # +/- 5 V
_10 = 2 # +/- 10 V
AUTO = 3 # Auto range
@API
class Bandwidth(Enum):
'''Channel bandwidth'''
_1 = 1 # Bandwidth #1
_2 = 2 # Bandwidth #2
_3 = 3 # Bandwidth #3
_4 = 4 # Bandwidth #4
_5 = 5 # Bandwidth #5
_6 = 6 # Bandwidth #6
_7 = 7 # Bandwidth #7
_8 = 8 # Bandwidth #8 (only with SP-300 series)
_9 = 9 # Bandwidth #9 (only with SP-300 series)
@API
class Gain(Enum):
'''E/I gain constants'''
_1 = 0
_10 = 1
_100 = 2
_1000 = 3
@API
class ElectrodeConn(Enum):
'''Electrode connection'''
STD = 0 # Standard connection
CETOGRND = 1 # CE to ground connection
WETOGRND = 2
HV = 3
@API
class ElectrodeMode(Enum):
'''Electrode Ground mode'''
GROUNDED = 0 # Grounded mode
FLOATING = 1 # floating mode
@API
class FilterFreqCut(Enum):
'''E/I filter constants'''
NONE = 0,
_50KHZ = 1,
_1KHZ = 2,
_5HZ = 3,
@API
class TechniqueIdentifier(Enum):
'''Technique ID'''
NONE = 0 # None
OCV = 100 # Open Circuit Voltage (Rest) identifier
CA = 101 # Chrono-amperometry identifier
CP = 102 # Chrono-potentiometry identifier
CV = 103 # Cyclic Voltammetry identifier
PEIS = 104 # Potentio Electrochemical Impedance Spectroscopy identifier
POTPULSE = 105 # (unused)
GALPULSE = 106 # (unused)
GEIS = 107 # Galvano Electrochemical Impedance Spectroscopy identifier
STACKPEIS_SLAVE = 108 # Potentio Electrochemical Impedance Spectroscopy on stack identifier
STACKPEIS = 109 # Potentio Electrochemical Impedance Spectroscopy on stack identifier
CPOWER = 110 # Constant Power identifier
CLOAD = 111 # Constant Load identifier
FCT = 112 # (unused)
SPEIS = 113 # Staircase Potentio Electrochemical Impedance Spectroscopy identifier
SGEIS = 114 # Staircase Galvano Electrochemical Impedance Spectroscopy identifier
STACKPDYN = 115 # Potentio dynamic on stack identifier
STACKPDYN_SLAVE = 116 # Potentio dynamic on stack identifier
STACKGDYN = 117 # Galvano dynamic on stack identifier
STACKGEIS_SLAVE = 118 # Galvano Electrochemical Impedance Spectroscopy on stack identifier
STACKGEIS = 119 # Galvano Electrochemical Impedance Spectroscopy on stack identifier
STACKGDYN_SLAVE = 120 # Galvano dynamic on stack identifier
CPO = 121 # (unused)
CGA = 122 # (unused)
COKINE = 123 # (unused)
PDYN = 124 # Potentio dynamic identifier
GDYN = 125 # Galvano dynamic identifier
CVA = 126 # Cyclic Voltammetry Advanced identifier
DPV = 127 # Differential Pulse Voltammetry identifier
SWV = 128 # Square Wave Voltammetry identifier
NPV = 129 # Normal Pulse Voltammetry identifier
RNPV = 130 # Reverse Normal Pulse Voltammetry identifier
DNPV = 131 # Differential Normal Pulse Voltammetry identifier
DPA = 132 # Differential Pulse Amperometry identifier
EVT = 133 # Ecorr vs. time identifier
LP = 134 # Linear Polarization identifier
GC = 135 # Generalized corrosion identifier
CPP = 136 # Cyclic Potentiodynamic Polarization identifier
PDP = 137 # Potentiodynamic Pitting identifier
PSP = 138 # Potentiostatic Pitting identifier
ZRA = 139 # Zero Resistance Ammeter identifier
MIR = 140 # Manual IR identifier
PZIR = 141 # IR Determination with Potentiostatic Impedance identifier
GZIR = 142 # IR Determination with Galvanostatic Impedance identifier
LOOP = 150 # Loop (used for linked techniques) identifier
TO = 151 # Trigger Out identifier
TI = 152 # Trigger In identifier
TOS = 153 # Trigger Set identifier
CPLIMIT = 155 # Chrono-potentiometry with limits identifier
GDYNLIMIT = 156 # Galvano dynamic with limits identifier
CALIMIT = 157 # Chrono-amperometry with limits identifier
PDYNLIMIT = 158 # Potentio dynamic with limits identifier
LASV = 159 # Large amplitude sinusoidal voltammetry
MUXLOOP = 160
CVCA = 161
CVCA_SLAVE = 162
CPCA = 163
CPCA_SLAVE = 164
CACA = 165
CACA_SLAVE = 166
MP = 167 # Modular Pulse
CASG = 169 # Constant amplitude sinusoidal micro galvano polarization
CASP = 170 # Constant amplitude sinusoidal micro potentio polarization
VASP = 171
UCVANALOG = 172
OCVR = 500
CAR = 501
CPR = 502
ABS = 1000
FLUO = 1001
RABS = 1002
RFLUO = 1003
RDABS = 1004
DABS = 1005
ABSFLUO = 1006
RAFABS = 1007
RAFFLUO = 1008
@API
class ChannelState(Enum):
'''Channel State'''
STOP = 0 # Channel is stopped
RUN = 1 # Channel is running
PAUSE = 2 # Channel is paused
@API
class ParameterType(Enum):
'''Parameter type'''
INT32 = 0 # Parameter type = int
BOOLEAN = 1 # Parameter type = boolean
SINGLE = 2 # Parameter type = single
@API
class ECLibErrorCode(Enum):
'''ECLib Error codes'''
NOERROR = 0 # No Error
# General error codes
NOTCONNECTED = -1 # no instrument connected
CONNECTIONINPROGRESS = -2 # connection in progress
CHANNELNOTPLUGGED = -3 # selected channel(s) unplugged
INVALIDPARAMETERS = -4 # invalid function parameters
FILENOTEXISTS = -5 # selected file does not exist
FUNCTIONFAILED = -6 # function failed
NOCHANNELELECTED = -7 # no channel selected
INVALIDCONF = -8 # invalid instrument configuration
ECLAB_LOADED = -9 # EC-Lab firmware loaded on the instrument
LIBNOTCORRECTLYLOADED = -10 # library not correctly loaded in memory
USBLIBRARYERROR = -11 # USB library not correctly loaded in memory
FUNCTIONINPROGRESS = -12 # function of the library already in progress
CHANNEL_RUNNING = -13 # selected channel(s) already used
DEVICE_NOTALLOWED = -14 # device not allowed
UPDATEPARAMETERS = -15 # Invalid update function parameters
# Instrument error codes
VMEERROR = -101 # internal instrument communication failed
TOOMANYDATA = -102 # too many data to transfer from the instrument (device error)
RESPNOTPOSSIBLE = -103 # selected channel(s) unplugged (device error)
RESPERROR = -104 # instrument response error
MSGSIZEERROR = -105 # invalid message size
# Communication error codes
COMMFAILED = -200 # communication failed with the instrument
CONNECTIONFAILED = -201 # cannot establish connection with the instrument
WAITINGACK = -202 # waiting for the instrument response
INVALIDIPADDRESS = -203 # invalid IP address
ALLOCMEMFAILED = -204 # cannot allocate memory in the instrument
LOADFIRMWAREFAILED = -205 # cannot load firmware into selected channel(s)
INCOMPATIBLESERVER = -206 # communication firmware not compatible with the library
MAXCONNREACHED = -207 # maximum number of allowed connections reached
# Firmware error codes
FIRMFILENOTEXISTS = -300 # cannot find kernel.bin file
FIRMFILEACCESSFAILED = -301 # cannot read kernel.bin file
FIRMINVALIDFILE = -302 # invalid kernel.bin file
FIRMLOADINGFAILED = -303 # cannot load kernel.bin on the selected channel(s)
XILFILENOTEXISTS = -304 # cannot find x100_01.txt file
XILFILEACCESSFAILED = -305 # cannot read x100_01.txt file
XILINVALIDFILE = -306 # invalid x100_01.txt file
XILLOADINGFAILED = -307 # cannot load x100_01.txt file on the selected channel(s)
FIRMWARENOTLOADED = -308 # no firmware loaded on the selected channel(s)
FIRMWAREINCOMPATIBLE = -309 # loaded firmware not compatible with the library
# Technique error codes
ECCFILENOTEXISTS = -400 # cannot find the selected ECC file
INCOMPATIBLEECC = -401 # ECC file not compatible with the channel firmware
ECCFILECORRUPTED = -402 # ECC file corrupted
LOADTECHNIQUEFAILED = -403 # cannot load the ECC file
DATACORRUPTED = -404 # data returned by the instrument are corrupted
MEMFULL = -405 # cannot load techniques: full memory
@API
class BLFindErrorCode(Enum):
'''BLFind Error codes'''
NOERROR = 0 # No Error
UNKNOWN = -1 # unknown error
INVALID_PARAMETER = -2 # invalid function parameters
ACK_TIMEOUT = -10 # instrument response timeout
EXP_RUNNING = -11 # experiment is running on instrument
CMD_FAILED = -12 # instrument do not execute command
FIND_FAILED = -20 # find failed
SOCKET_WRITE = -21 # cannot write the request of the descriptions of ethernet instruments
SOCKET_READ = -22 # cannot read descriptions of ethernet instrument
CFG_MODIFY_FAILED = -30 # set TCP/IP parameters failed
READ_PARAM_FAILED = -31 # deserialization of TCP/IP parameters failed
EMPTY_PARAM = -32 # not any TCP/IP parameters in serialization
IP_FORMAT = -33 # invalid format of IP address
NM_FORMAT = -34 # invalid format of netmask address
GW_FORMAT = -35 # invalid format of gateway address
IP_NOT_FOUND = -38 # instrument to modify not found
IP_ALREADYEXIST = -39 # new IP address in TCP/IP parameters already exists
@API
class ConnectionMode(Enum):
'''Connection mode'''
USB = 0
ETH = 1
Instrument = NamedTuple('Instrument',
('connection_mode', 'address', 'gateway', 'netmask',
'MAC', 'identifier', 'type', 'serial_number', 'name'))
Technique = NamedTuple('Technique', ('file_name', 'params'))
Parameter = NamedTuple('Parameter', ('name', 'value', 'index'))
@API
class MParameter(object):
'''Meta parameter information'''
def __init__(self, name, dtype, description='', len_range=(None, None),
value_range=(None, None)):
self.name = name
self.dtype = dtype
self.description = description
self.len_range = len_range
self.value_range = value_range
def __call__(self, value, index=0):
return Parameter(self.name, self.dtype(value), index)
def __getitem__(self, array):
return [self(v, i) for i, v in enumerate(array)]
def __repr__(self):
return 'MParameter({0})'.format(self.name)
def __str__(self):
return 'MParameter({0})'.format(self.name)
@API
class MTechnique(object):
'''Meta technique information.
To create a new meta technique (not used often)::
MYTECH = MTechnique(999, 'mytech',
MParameter('Rest_time_T', float, 'Rest duration (s)'),
MParameter('Record_every_dE', float, 'Record every dE (V)'),
MParameter('Record_every_dT', float, 'Record every dT (s)'),
summary="""my technique""",
description="""bla bla bla very good technique bla bla""")
To create a new technique instance that can be loaded to the potentiostat do::
p = Potentiostat('192.109.209.128')
my_tech = MYTECH(MYTECH.Rest_time_T(0.1),
MYTECH.Record_every_dE(0.1),
MYTECH.Record_every_dT(0.1))
p.load_technique(0, my_tech)
'''
HardwareParams = (
MParameter('I_Range', IntensityRange, 'I range'),
MParameter('E_Range', VoltageRange, 'Ewe range'),
MParameter('Bandwidth', Bandwidth, 'Bandwith'),
MParameter('tb', float, 'Time base (s)'),
)
def __init__(self, id, *meta_params, **kwargs):
self.id = id
meta_params = meta_params
meta_params = self.HardwareParams + meta_params
self.meta_params = OrderedDict((p.name, p) for p in meta_params)
self.fname = kwargs.get('file_name', self.id.name.lower())
self.summary = kwargs.pop('summary', '')
self.description = kwargs.pop('description', '')
self.handle_data = kwargs.pop('data_handler', None)
@staticmethod
def __params_iter(params):
for param in params:
if isinstance(param, Parameter):
yield param
else:
for pparam in param:
yield pparam
def __call__(self, *params):
params = list(MTechnique.__params_iter(params))
return Technique(self.fname, params)
def __repr__(self):
return 'MTechnique({0}, #{1})'.format(self.summary, self.id)
def __str__(self):
return 'MTechnique({0}, #{1})'.format(self.summary, self.id)
def __getattr__(self, name):
return self.meta_params[name]
# Exceptions -----------------------------------------------------------------
@API
class BiologicError(Exception):
'''Base error class'''
pass
@API
class BiologicErrorCode(BiologicError):
'''Biologic error with error code'''
def __init__(self, msg, error_code, *args):
args = [msg] + list(args)
super(BiologicError, self).__init__(*args)
self.error_code = error_code
@API
class ECLibError(BiologicErrorCode):
'''ECLib error with error code'''
pass
@API
class BLFindError(BiologicErrorCode):
'''BLFind error with error code'''
pass
def __not_implemented(pid, *args, **kwargs):
raise NotImplementedError
def __handle_params(f, args, kwargs):
assert(len(args) == len(f.argtypes))
f_args = []
for arg_type, arg in zip(f.argtypes, args):
# TODO
f_args.append(arg)
return f_args, kwargs
def __call_eclib(f, *args, **kwargs):
'''
calls the specified eclib function,
transforming the result into an exception if necessary
'''
result = f(*args, **kwargs)
result = ECLibErrorCode(result)
if result != ECLibErrorCode.NOERROR:
raise ECLibError(get_eclib_error_msg(result.value), result)
return result
def __call_eclib_params(f, *args, **kwargs):
'''
calls the specified eclib function managing parameters in a default way,
transforming the result into an exception if necessary
'''
f_args, f_kwargs = __handle_params(f, args, kwargs)
__call_eclib(f, *f_args, **f_kwargs)
def __call_blfind(f, *args, **kwargs):
result = f(*args, **kwargs)
result = BLFindErrorCode(result)
if result != BLFindErrorCode.NOERROR:
raise BLFindError(get_blfind_error_msg(result.value), result)
return result
def __unpack_str(msg, size):
# some versions of the library have a bug which returns some strings
# in the form: C\x00C\x00... where C is a valid character and \x00 is the null.
# this function tries to overcome that problem
size = size.value
if msg[0] == '\x00':
return ''
if size < 2 or msg[1] != '\x00':
return msg.value
_log.warn('received strange response: %r...', msg[:10])
return msg[0:size*2:2]
def _get_base_log_name(url):
return 'Potentiostat({0})'.format(url)
def _get_log(url=None):
if url is None:
return _log
return _log.getChild(_get_base_log_name(url))
def log_it(f=None, log_name='.', level=None, msg=None, args=None, kwargs=None):
if f is None:
return functools.partial(log_it, log_name=log_name, level=level,
msg=msg, args=args, kwargs=kwargs)
if msg is None:
msg = f.__name__ + '()'
args, kwargs = (), {}
elif kwargs is None:
kwargs = {}
@functools.wraps(f)
def wrap(pid, *a, **ka):
if log_name == '.':
log = _get_log(pid.url)
else:
log = _log.getChild(log_name)
log.log(level, msg, *args, **kwargs)
return f(pid, *a, **ka)
return wrap
debug_it = functools.partial(log_it, level=logging.DEBUG)
## BL find -------------------------------------------------------------------
def __str_to_instruments(msg):
instruments = []