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workflow
ewoksapps
est
Commits
7b374731
Commit
7b374731
authored
Aug 03, 2021
by
payno
Browse files
PEP8
parent
76aab690
Pipeline
#51923
failed with stages
in 11 minutes and 46 seconds
Changes
57
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
est/app/canvas_launcher/__init__.py
View file @
7b374731
from
.launcher
import
Launcher
from
.launcher
import
Launcher
# noqa
est/app/process.py
View file @
7b374731
...
...
@@ -7,14 +7,13 @@ from ewoksorange.owsconvert import ows_to_ewoks
from
.utils
import
get_unit
from
.utils
import
get_url
from
.utils
import
convert_spectra_dims
from
.utils
import
get_xas_obj
try
:
import
h5py
has_h5py
=
True
except
:
import
h5py
# noqa
except
ImportError
:
has_h5py
=
False
else
:
has_h5py
=
True
logging
.
basicConfig
(
level
=
logging
.
DEBUG
)
_logger
=
logging
.
getLogger
(
__name__
)
...
...
est/app/test/test_exec.py
View file @
7b374731
...
...
@@ -37,7 +37,7 @@ from est.io.utils.information import InputInformation
from
silx.io.url
import
DataUrl
try
:
import
PyMca5
import
PyMca5
# noqa
except
ImportError
:
has_pymca
=
False
else
:
...
...
est/app/utils/__init__.py
View file @
7b374731
...
...
@@ -32,18 +32,19 @@ from silx.io.url import DataUrl
from
est.units
import
ur
from
est.core.types
import
Dim
from
est.io.utils
import
get_data
from
est.core.types
import
Spectrum
,
XASObject
from
est.core.types
import
XASObject
from
est.core.io
import
read_xas
from
est.io.utils.information
import
InputInformation
import
logging
from
est
import
settings
try
:
from
est.io.utils.spec
import
read_spectrum
has_read_spectrum
=
True
from
est.io.utils.spec
import
read_spectrum
# noqa
except
ImportError
:
has_read_spectrum
=
False
else
:
has_read_spectrum
=
True
_logger
=
logging
.
getLogger
(
__name__
)
...
...
est/core/io.py
View file @
7b374731
...
...
@@ -33,7 +33,7 @@ from est.io import read_xas, write_xas, get_xasproc
from
est.core.types
import
XASObject
from
silx.io.url
import
DataUrl
from
est.core.types
import
Dim
from
est.units
import
ur
,
convert_to
from
est.units
import
ur
from
typing
import
Union
from
est.io.utils.information
import
InputInformation
import
h5py
...
...
est/core/process/energyroi.py
View file @
7b374731
...
...
@@ -27,12 +27,8 @@ __authors__ = ["H. Payno"]
__license__
=
"MIT"
__date__
=
"27/01/2021"
from
est.core.types
import
XASObject
from
.process
import
Process
from
est.core.process.process
import
_input_desc
from
est.core.process.process
import
_output_desc
import
logging
from
typing
import
Union
_logger
=
logging
.
getLogger
(
__name__
)
...
...
est/core/process/io.py
View file @
7b374731
...
...
@@ -30,8 +30,6 @@ __date__ = "06/11/2019"
from
.process
import
Process
from
est.core.types
import
XASObject
from
est.core.process.process
import
_input_desc
from
est.core.process.process
import
_output_desc
from
est.io.utils.information
import
InputInformation
import
pkg_resources
...
...
est/core/process/larch/autobk.py
View file @
7b374731
...
...
@@ -27,8 +27,6 @@
from
est.core.types
import
Spectrum
,
XASObject
from
est.core.process.process
import
Process
from
est.core.process.process
import
_NexusDatasetDef
from
est.core.process.process
import
_input_desc
from
est.core.process.process
import
_output_desc
from
larch.xafs.autobk
import
autobk
import
multiprocessing
import
functools
...
...
est/core/process/larch/mback.py
View file @
7b374731
...
...
@@ -27,8 +27,6 @@
from
est.core.types
import
Spectrum
,
XASObject
from
est.core.process.process
import
Process
from
est.core.process.process
import
_NexusDatasetDef
from
est.core.process.process
import
_input_desc
from
est.core.process.process
import
_output_desc
from
larch.xafs.mback
import
mback
import
multiprocessing
import
functools
...
...
@@ -93,7 +91,7 @@ def process_spectr_mback(
):
if
opt_name
in
_conf
:
opts
[
opt_name
]
=
_conf
[
opt_name
]
if
not
"z"
in
opts
:
if
"z"
not
in
opts
:
raise
ValueError
(
"atomic number of the absorber is not specify"
)
if
_DEBUG
is
True
:
...
...
est/core/process/larch/mback_norm.py
View file @
7b374731
...
...
@@ -27,8 +27,6 @@
from
est.core.types
import
Spectrum
,
XASObject
from
est.core.process.process
import
Process
from
est.core.process.process
import
_NexusDatasetDef
from
est.core.process.process
import
_input_desc
from
est.core.process.process
import
_output_desc
from
larch.xafs.mback
import
mback_norm
from
larch.xafs.pre_edge
import
preedge
import
multiprocessing
...
...
est/core/process/larch/pre_edge.py
View file @
7b374731
...
...
@@ -27,8 +27,6 @@
from
est.core.types
import
Spectrum
,
XASObject
from
est.core.process.process
import
Process
from
est.core.process.process
import
_NexusSpectrumDef
,
_NexusDatasetDef
from
est.core.process.process
import
_input_desc
from
est.core.process.process
import
_output_desc
from
est.core.utils.symbol
import
MU_CHAR
from
larch.xafs.pre_edge
import
pre_edge
import
multiprocessing
...
...
est/core/process/larch/test/test_autobk.py
View file @
7b374731
...
...
@@ -34,7 +34,7 @@ import urllib.request
from
est.core.types
import
Spectrum
,
XASObject
try
:
import
larch
import
larch
# noqa
except
ImportError
:
has_larch
=
False
else
:
...
...
est/core/process/larch/test/test_mback.py
View file @
7b374731
...
...
@@ -34,7 +34,7 @@ import urllib.request
from
est.core.types
import
Spectrum
,
XASObject
try
:
import
larch
import
larch
# noqa
except
ImportError
:
has_larch
=
False
else
:
...
...
est/core/process/larch/test/test_mback_norm.py
View file @
7b374731
...
...
@@ -34,7 +34,7 @@ import urllib.request
from
est.core.types
import
Spectrum
,
XASObject
try
:
import
larch
import
larch
# noqa
except
ImportError
:
has_larch
=
False
else
:
...
...
est/core/process/larch/test/test_pre_edge.py
View file @
7b374731
...
...
@@ -34,7 +34,7 @@ import urllib.request
from
est.core.types
import
Spectrum
,
XASObject
try
:
import
larch
import
larch
# noqa
except
ImportError
:
has_larch
=
False
else
:
...
...
est/core/process/larch/test/test_workflow.py
View file @
7b374731
...
...
@@ -35,12 +35,12 @@ import numpy
from
est.core.types
import
Spectrum
try
:
import
larch
import
larch
# noqa
except
ImportError
:
has_larch
=
False
else
:
has_larch
=
True
from
est.core.process.larch.xftf
import
larch_xftf
,
process_spectr_xftf
as
xftf
from
est.core.process.larch.xftf
import
process_spectr_xftf
as
xftf
from
est.core.process.larch.autobk
import
process_spectr_autobk
as
autobk
from
est.core.process.larch.pre_edge
import
process_spectr_pre_edge
as
pre_edge
from
est.io.utils.larch
import
read_ascii
...
...
est/core/process/larch/test/test_xftf.py
View file @
7b374731
...
...
@@ -34,7 +34,7 @@ import urllib.request
from
est.core.types
import
Spectrum
,
XASObject
try
:
import
larch
import
larch
# noqa
except
ImportError
:
has_larch
=
False
else
:
...
...
est/core/process/larch/xftf.py
View file @
7b374731
...
...
@@ -28,8 +28,6 @@ from est.core.types import Spectrum, XASObject
from
est.core.process.process
import
Process
from
est.core.process.process
import
_NexusSpectrumDef
from
est.core.process.process
import
_NexusDatasetDef
from
est.core.process.process
import
_input_desc
from
est.core.process.process
import
_output_desc
from
larch.xafs.xafsft
import
xftf
from
est.core.utils.symbol
import
ANGSTROM_CHAR
import
multiprocessing
...
...
est/core/process/noise.py
View file @
7b374731
...
...
@@ -29,8 +29,6 @@ __date__ = "18/01/2021"
from
est.core.types
import
XASObject
from
est.core.types
import
Spectrum
from
est.core.process.process
import
_input_desc
from
est.core.process.process
import
_output_desc
from
.process
import
Process
from
.process
import
_NexusSpectrumDef
from
.process
import
_NexusDatasetDef
...
...
@@ -40,7 +38,6 @@ import numpy
import
pkg_resources
import
multiprocessing
import
functools
from
typing
import
Union
_logger
=
logging
.
getLogger
(
__name__
)
...
...
@@ -80,21 +77,21 @@ def process_noise_savgol(
)
if
"noise"
in
configuration
:
configuration
=
configuration
[
"noise"
]
if
not
"window_size"
in
configuration
:
if
"window_size"
not
in
configuration
:
raise
ValueError
(
"`window_size` should be specify. Missing in configuration"
)
else
:
window_size
=
configuration
[
"window_size"
]
if
not
"polynomial_order"
in
configuration
:
if
"polynomial_order"
not
in
configuration
:
raise
ValueError
(
"`polynomial_order` should be specify. Missing in configuration"
)
else
:
polynomial_order
=
configuration
[
"polynomial_order"
]
if
not
"e_min"
in
configuration
:
if
"e_min"
not
in
configuration
:
e_min
=
None
else
:
e_min
=
configuration
[
"e_min"
]
if
not
"e_max"
in
configuration
:
if
"e_max"
not
in
configuration
:
e_max
=
None
else
:
e_max
=
configuration
[
"e_max"
]
...
...
est/core/process/process.py
View file @
7b374731
...
...
@@ -124,13 +124,6 @@ class _NexusSpectrumDef:
def
title_latex
(
self
):
return
self
.
__title_latex
@
title
.
setter
def
title_latex
(
self
,
title
):
if
not
isinstance
(
title
,
(
str
,
type
(
None
))):
raise
TypeError
(
"`title` should be an instance of str or None"
)
else
:
self
.
__title_latex
=
title
class
_NexusDatasetDef
:
"""Util function to define a Nexus plot"""
...
...
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