[io][write_xas] replace writing xas using HDF5File by using dicttonx

5 jobs for integrate_h5tonx in 61 minutes and 58 seconds (queued for 2 seconds)
Status Name Job ID Coverage
  Style
passed check_style #187695

00:01:48

 
  Test
failed test:python3.7-stretch-pyqt5_larch #187697

00:02:48

failed test:python3.7-stretch-pyqt5_pymca #187696

01:00:06

failed test:python3.7-stretch-pyqt5_pymca_larch #187698

01:00:09

passed test:test-est-tutorials_pymca #187699

00:03:29

 
Name Stage Failure
failed
test:python3.7-stretch-pyqt5_pymca_larch Test The script exceeded the maximum execution time set for the job
INFO:pypushflow.PythonActor:In triggerDownStreamActor for 1-est.core.process.pymca.k_weight.PyMca_k_weight, Output channel is xas_obj, inData is {'configuration': {'Normalization': {'PostEdge': {'Polynomial': 'Linear', 'Method': 'Polynomial', 'Regions': [10.0, 300.0]}, 'JumpNormalizationMethod': 'Flattened', 'PreEdge': {'Polynomial': 'Parabolic', 'Method': 'Polynomial', 'Regions': [-100.0, -40.0]}, 'E0Method': 'Auto - 5pt SG', 'E0Value': 200.0, 'E0MinValue': None, 'E0MaxValue': None, 'KWeight': 1}, 'EXAFS': {'KWeight': 1, 'KMin': 2.0, 'KMax': 20.0, 'Knots': {'Values': [8.0, 14.0], 'Number': 2, 'Orders': [3, 3, 3]}}, 'SET_KWEIGHT': 1, 'FT': {'KWeight': 1}, 'KWeight': 1}, 'spectra': 'est:///tmp/tmp9mlboj5h/scan1__flow.h5?scan1/est_saving_pt/spectra', 'energy': 'silx:///tmp/tmp9mlboj5h/scan1__flow.h5?scan1/est_saving_pt/channel', 'dim1': 1, 'dim2': 1, 'linked_h5_file': '/tmp/tmp9mlboj5h/scan1__flow.h5', 'current_processing_index': 3}
INFO:pypushflow.PythonActor:On trigger channel is xas_obj
ft: [--------------------] 0% ft: [####################] 100% DONE
WARNING:pypushflow.PythonActor:---------------------
WARNING:pypushflow.PythonActor:('xas_obj', {'configuration': {'Normalization': {'PostEdge': {'Polynomial': 'Linear', 'Method': 'Polynomial', 'Regions': [10.0, 300.0]}, 'JumpNormalizationMethod': 'Flattened', 'PreEdge': {'Polynomial': 'Parabolic', 'Method': 'Polynomial', 'Regions': [-100.0, -40.0]}, 'E0Method': 'Auto - 5pt SG', 'E0Value': 200.0, 'E0MinValue': None, 'E0MaxValue': None, 'KWeight': 1}, 'EXAFS': {'KWeight': 1, 'KMin': 2.0, 'KMax': 20.0, 'Knots': {'Values': [8.0, 14.0], 'Number': 2, 'Orders': [3, 3, 3]}}, 'SET_KWEIGHT': 1, 'FT': {'Points': 2048, 'WindowApodization': 0.02, 'WindowList': ['Gaussian', 'Hanning', 'Box', 'Parzen', 'Welch', 'Hamming', 'Tukey', 'Papul', 'Kaiser'], 'WindowRange': [2.0, 20.0], 'Range': [0.0, 7.0], 'KStep': 0.04, 'Window': 'Hanning'}, 'KWeight': 1}, 'spectra': 'est:///tmp/tmp9mlboj5h/scan1__flow.h5?scan1/est_saving_pt/spectra', 'energy': 'silx:///tmp/tmp9mlboj5h/scan1__flow.h5?scan1/est_saving_pt/channel', 'dim1': 1, 'dim2': 1, 'linked_h5_file': '/tmp/tmp9mlboj5h/scan1__flow.h5', 'current_processing_index': 4})
WARNING:pypushflow.PythonActor:---------------------
INFO:pypushflow.PythonActor:In triggerDownStreamActor for 3-est.core.process.pymca.ft.PyMca_ft, Output channel is xas_obj, inData is {'configuration': {'Normalization': {'PostEdge': {'Polynomial': 'Linear', 'Method': 'Polynomial', 'Regions': [10.0, 300.0]}, 'JumpNormalizationMethod': 'Flattened', 'PreEdge': {'Polynomial': 'Parabolic', 'Method': 'Polynomial', 'Regions': [-100.0, -40.0]}, 'E0Method': 'Auto - 5pt SG', 'E0Value': 200.0, 'E0MinValue': None, 'E0MaxValue': None, 'KWeight': 1}, 'EXAFS': {'KWeight': 1, 'KMin': 2.0, 'KMax': 20.0, 'Knots': {'Values': [8.0, 14.0], 'Number': 2, 'Orders': [3, 3, 3]}}, 'SET_KWEIGHT': 1, 'FT': {'Points': 2048, 'WindowApodization': 0.02, 'WindowList': ['Gaussian', 'Hanning', 'Box', 'Parzen', 'Welch', 'Hamming', 'Tukey', 'Papul', 'Kaiser'], 'WindowRange': [2.0, 20.0], 'Range': [0.0, 7.0], 'KStep': 0.04, 'Window': 'Hanning'}, 'KWeight': 1}, 'spectra': 'est:///tmp/tmp9mlboj5h/scan1__flow.h5?scan1/est_saving_pt/spectra', 'energy': 'silx:///tmp/tmp9mlboj5h/scan1__flow.h5?scan1/est_saving_pt/channel', 'dim1': 1, 'dim2': 1, 'linked_h5_file': '/tmp/tmp9mlboj5h/scan1__flow.h5', 'current_processing_index': 4}
INFO:pypushflow.PythonActor:On trigger channel is xas_obj
ERROR: Job failed: execution took longer than 1h0m0s seconds
failed
test:python3.7-stretch-pyqt5_larch Test
SKIPPED: test (est.app.test.test_reprocessing.TestReprocessingPyMca)
----------------------------------------------------------------------
PyMca5 is not installed
----------------------------------------------------------------------
Ran 60 tests in 44.327s

FAILED (errors=7, skipped=27)
Cleaning up file based variables
ERROR: Job failed: exit code 1
failed
test:python3.7-stretch-pyqt5_pymca Test The script exceeded the maximum execution time set for the job
INFO:pypushflow.PythonActor:In triggerDownStreamActor for 1-est.core.process.pymca.k_weight.PyMca_k_weight, Output channel is xas_obj, inData is {'configuration': {'Normalization': {'PostEdge': {'Polynomial': 'Linear', 'Method': 'Polynomial', 'Regions': [10.0, 300.0]}, 'JumpNormalizationMethod': 'Flattened', 'PreEdge': {'Polynomial': 'Parabolic', 'Method': 'Polynomial', 'Regions': [-100.0, -40.0]}, 'E0Method': 'Auto - 5pt SG', 'E0Value': 200.0, 'E0MinValue': None, 'E0MaxValue': None, 'KWeight': 1}, 'EXAFS': {'KWeight': 1, 'KMin': 2.0, 'KMax': 20.0, 'Knots': {'Values': [8.0, 14.0], 'Number': 2, 'Orders': [3, 3, 3]}}, 'SET_KWEIGHT': 1, 'FT': {'KWeight': 1}, 'KWeight': 1}, 'spectra': 'est:///tmp/tmp20zqq0x1/scan1__flow.h5?scan1/est_saving_pt/spectra', 'energy': 'silx:///tmp/tmp20zqq0x1/scan1__flow.h5?scan1/est_saving_pt/channel', 'dim1': 1, 'dim2': 1, 'linked_h5_file': '/tmp/tmp20zqq0x1/scan1__flow.h5', 'current_processing_index': 3}
INFO:pypushflow.PythonActor:On trigger channel is xas_obj
ft: [--------------------] 0% ft: [####################] 100% DONE
WARNING:pypushflow.PythonActor:---------------------
WARNING:pypushflow.PythonActor:('xas_obj', {'configuration': {'Normalization': {'PostEdge': {'Polynomial': 'Linear', 'Method': 'Polynomial', 'Regions': [10.0, 300.0]}, 'JumpNormalizationMethod': 'Flattened', 'PreEdge': {'Polynomial': 'Parabolic', 'Method': 'Polynomial', 'Regions': [-100.0, -40.0]}, 'E0Method': 'Auto - 5pt SG', 'E0Value': 200.0, 'E0MinValue': None, 'E0MaxValue': None, 'KWeight': 1}, 'EXAFS': {'KWeight': 1, 'KMin': 2.0, 'KMax': 20.0, 'Knots': {'Values': [8.0, 14.0], 'Number': 2, 'Orders': [3, 3, 3]}}, 'SET_KWEIGHT': 1, 'FT': {'Points': 2048, 'WindowApodization': 0.02, 'WindowList': ['Gaussian', 'Hanning', 'Box', 'Parzen', 'Welch', 'Hamming', 'Tukey', 'Papul', 'Kaiser'], 'WindowRange': [2.0, 20.0], 'Range': [0.0, 7.0], 'KStep': 0.04, 'Window': 'Hanning'}, 'KWeight': 1}, 'spectra': 'est:///tmp/tmp20zqq0x1/scan1__flow.h5?scan1/est_saving_pt/spectra', 'energy': 'silx:///tmp/tmp20zqq0x1/scan1__flow.h5?scan1/est_saving_pt/channel', 'dim1': 1, 'dim2': 1, 'linked_h5_file': '/tmp/tmp20zqq0x1/scan1__flow.h5', 'current_processing_index': 4})
WARNING:pypushflow.PythonActor:---------------------
INFO:pypushflow.PythonActor:In triggerDownStreamActor for 3-est.core.process.pymca.ft.PyMca_ft, Output channel is xas_obj, inData is {'configuration': {'Normalization': {'PostEdge': {'Polynomial': 'Linear', 'Method': 'Polynomial', 'Regions': [10.0, 300.0]}, 'JumpNormalizationMethod': 'Flattened', 'PreEdge': {'Polynomial': 'Parabolic', 'Method': 'Polynomial', 'Regions': [-100.0, -40.0]}, 'E0Method': 'Auto - 5pt SG', 'E0Value': 200.0, 'E0MinValue': None, 'E0MaxValue': None, 'KWeight': 1}, 'EXAFS': {'KWeight': 1, 'KMin': 2.0, 'KMax': 20.0, 'Knots': {'Values': [8.0, 14.0], 'Number': 2, 'Orders': [3, 3, 3]}}, 'SET_KWEIGHT': 1, 'FT': {'Points': 2048, 'WindowApodization': 0.02, 'WindowList': ['Gaussian', 'Hanning', 'Box', 'Parzen', 'Welch', 'Hamming', 'Tukey', 'Papul', 'Kaiser'], 'WindowRange': [2.0, 20.0], 'Range': [0.0, 7.0], 'KStep': 0.04, 'Window': 'Hanning'}, 'KWeight': 1}, 'spectra': 'est:///tmp/tmp20zqq0x1/scan1__flow.h5?scan1/est_saving_pt/spectra', 'energy': 'silx:///tmp/tmp20zqq0x1/scan1__flow.h5?scan1/est_saving_pt/channel', 'dim1': 1, 'dim2': 1, 'linked_h5_file': '/tmp/tmp20zqq0x1/scan1__flow.h5', 'current_processing_index': 4}
INFO:pypushflow.PythonActor:On trigger channel is xas_obj
ERROR: Job failed: execution took longer than 1h0m0s seconds