tomwer issueshttps://gitlab.esrf.fr/tomotools/tomwer/-/issues2024-03-28T09:11:50+01:00https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1155move to native namespace packages2024-03-28T09:11:50+01:00paynomove to native namespace packagessee example in https://gitlab.esrf.fr/workflow/ewoksapps/est/-/merge_requests/136 and details in https://confluence.esrf.fr/display/AAWWK/2024-03-27+Meeting+notessee example in https://gitlab.esrf.fr/workflow/ewoksapps/est/-/merge_requests/136 and details in https://confluence.esrf.fr/display/AAWWK/2024-03-27+Meeting+notes1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1154Add ID16b workflows to tomwer canvas2024-03-27T15:58:12+01:00paynoAdd ID16b workflows to tomwer canvasAdd ID16B insitu workflow to the examplesAdd ID16B insitu workflow to the examples1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1152integrate ewoksorange >= 0.72024-03-18T13:34:54+01:00paynointegrate ewoksorange >= 0.7remove usage of `pkgutil` as wellremove usage of `pkgutil` as well1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1150examples: add a remote cast example in examples / remote processing2024-03-13T14:10:14+01:00paynoexamples: add a remote cast example in examples / remote processing1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1148get images along different axis2024-03-13T14:28:43+01:00paynoget images along different axisIt would be nice to have a widget taking a volume as input and and select some slices.
Then this will create .tiff or something else of the volume.
Behavior to be clearly definedIt would be nice to have a widget taking a volume as input and and select some slices.
Then this will create .tiff or something else of the volume.
Behavior to be clearly defined1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1147nabu slice: reconstruction over different axis2024-03-13T14:28:39+01:00paynonabu slice: reconstruction over different axisFor now we can reconstruct over different axis. But only one axis can be selected. It would be nice to let the user selected the axis by something like:
```bash
XY:middle, YZ:middle...
```For now we can reconstruct over different axis. But only one axis can be selected. It would be nice to let the user selected the axis by something like:
```bash
XY:middle, YZ:middle...
```1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1132ImageKeyEditor: ewoksify2024-02-23T15:06:36+01:00paynoImageKeyEditor: ewoksifythere is no reason why this process couldn't be ewoksifythere is no reason why this process couldn't be ewoksify1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1131volum reprocess: reprocessing fails because no nabu existing2024-03-07T10:44:39+01:00paynovolum reprocess: reprocessing fails because no nabu existingAs the reprocessing from the slurm supervisor is simply creating the object he doesn't keep trace of the latest nabu reconstruction parameters used.
So he cannot reprocessAs the reprocessing from the slurm supervisor is simply creating the object he doesn't keep trace of the latest nabu reconstruction parameters used.
So he cannot reprocess1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1130fix coherence `clear_cache` vs `clear_caches`2024-02-23T08:35:35+01:00paynofix coherence `clear_cache` vs `clear_caches`Looks like for scan this is named \`clear_caches\` as for the TomwerObject when for Volume this is named \`clear_cache\`. There should be only oneLooks like for scan this is named \`clear_caches\` as for the TomwerObject when for Volume this is named \`clear_cache\`. There should be only one1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1127volume cancelled: create an error about the screenshot creation2024-02-23T08:57:40+01:00paynovolume cancelled: create an error about the screenshot creation2024-02-22 16:38:25,499 [ERROR ] screenshot creation failed. Error is [tomwer.core.process.reconstruction.nabu.nabuvolume](nabuvolume.py:548)
2024-02-22 16:38:25,499:ERROR:tomwer.core.process.reconstruction.nabu.nabuvolume: screenshot ...2024-02-22 16:38:25,499 [ERROR ] screenshot creation failed. Error is [tomwer.core.process.reconstruction.nabu.nabuvolume](nabuvolume.py:548)
2024-02-22 16:38:25,499:ERROR:tomwer.core.process.reconstruction.nabu.nabuvolume: screenshot creation failed. Error is1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1122Volume viewer: add test to make sure metadata are displayed2024-02-16T11:56:24+01:00paynoVolume viewer: add test to make sure metadata are displayedLooks like there is no test to make sure metadata are properly displayed (see #1119 )Looks like there is no test to make sure metadata are properly displayed (see #1119 )1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1121tomwer.gui.visualization.volumeviewer: refactor _ScanInfo2024-02-16T11:48:48+01:00paynotomwer.gui.visualization.volumeviewer: refactor _ScanInfoEither _ScanInfo is already existing somewhere either (I think it is) it must be moved somewhere else because this is not specific to the volume viewerEither _ScanInfo is already existing somewhere either (I think it is) it must be moved somewhere else because this is not specific to the volume viewer1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1120Doc: a link to volume API2024-02-16T11:35:03+01:00paynoDoc: a link to volume APIthis example: https://tomwer.readthedocs.io/en/1.3/user_guide/python_scripts/load_volume.html
should provide a 'clickable' link to the volume API.this example: https://tomwer.readthedocs.io/en/1.3/user_guide/python_scripts/load_volume.html
should provide a 'clickable' link to the volume API.1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1118create an publish automatically wheels for tomwer on tags2024-02-16T10:29:33+01:00paynocreate an publish automatically wheels for tomwer on tags1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1117volume selector: add path auto completion to the file path QLineEdit2024-02-15T16:32:02+01:00paynovolume selector: add path auto completion to the file path QLineEditThe second line of the volume selector (file or folder path) should have some auto-completion to ease selection of a volumeThe second line of the volume selector (file or folder path) should have some auto-completion to ease selection of a volume1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1116Axis: rework2024-02-15T10:54:04+01:00paynoAxis: reworkNow that CORFinder is called we should be able to simplify the tomwer.core.process.reconstruction.axis file and group some treatments.
The dedicated 'composite_options' can also be simplifiedNow that CORFinder is called we should be able to simplify the tomwer.core.process.reconstruction.axis file and group some treatments.
The dedicated 'composite_options' can also be simplified1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1115output folder: raise an error message if no folder provided2024-02-23T08:58:05+01:00paynooutput folder: raise an error message if no folder providedIf the box is empty then output will be the user home. And this is not expected.
If selected but not provided we should raise an Error message.If the box is empty then output will be the user home. And this is not expected.
If selected but not provided we should raise an Error message.1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1114slurm widget: provide default version according to tomwer version2024-02-12T15:24:01+01:00paynoslurm widget: provide default version according to tomwer versionFor now by default we propose the latest stable version but it would make more sense to propose the one fitting the version currently executed to make it safer at the compatibility side (volume url...)
Using `os.executable` and one fold...For now by default we propose the latest stable version but it would make more sense to propose the one fitting the version currently executed to make it safer at the compatibility side (volume url...)
Using `os.executable` and one folder name should make it until we are coherent between all environment1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1110Add an option to remove reduced darks and flats and caches2024-02-09T10:43:25+01:00paynoAdd an option to remove reduced darks and flats and cachesWe would need to have a widget or a button (in the data viewer ?) to remove / clear all existing reduced darks and flats.
Because they can be on the cache and / or copied from a scan that we don't want (after a wrong manipulation). So a...We would need to have a widget or a button (in the data viewer ?) to remove / clear all existing reduced darks and flats.
Because they can be on the cache and / or copied from a scan that we don't want (after a wrong manipulation). So a simple button could be helpful1.4https://gitlab.esrf.fr/tomotools/tomwer/-/issues/1108fix `namespace_packages` deprecation warning2024-02-08T08:48:55+01:00paynofix `namespace_packages` deprecation warning```
tomwer_venv_silx_2 payno@linpayno:~/Documents/dev/tomography/tomwer$ python setup.py bdist_wheel sdist
/home/payno/.local/share/virtualenvs/tomwer_venv_silx_2/lib/python3.11/site-packages/setuptools/config/setupcfg.py:293: _Deprecate...```
tomwer_venv_silx_2 payno@linpayno:~/Documents/dev/tomography/tomwer$ python setup.py bdist_wheel sdist
/home/payno/.local/share/virtualenvs/tomwer_venv_silx_2/lib/python3.11/site-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`
!!
********************************************************************************
The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420).
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
```1.4