nxtomomill merge requestshttps://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests2023-12-19T16:43:56+01:00https://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests/207Fix icat2023-12-19T16:43:56+01:00paynoFix icathttps://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests/170Template output name for zstages2nx2023-07-13T01:05:35+02:00myronTemplate output name for zstages2nxThis add the possibility to provide a templated output name, beside the default one which is derived from the bliss filesThis add the possibility to provide a templated output name, beside the default one which is derived from the bliss filesmyronmyronhttps://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests/142fix: translation must take into account magnification2022-11-28T17:01:13+01:00paynofix: translation must take into account magnificationOtherwise pixel size and translation are into two different reference.
Expected reference is the one of EBS-tomo (Bliss) like:
|
| z
|
----------->
/ x - beam
/
/ y
Notes:
* as x is parall...Otherwise pixel size and translation are into two different reference.
Expected reference is the one of EBS-tomo (Bliss) like:
|
| z
|
----------->
/ x - beam
/
/ y
Notes:
* as x is parallel to the beam magnification will have to effect to it.
* for EDF we don't have information regarding magnification. So this information must be given by the user (by editing the NXtomo output file)0.11https://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests/86append a new title to settings2022-02-08T11:25:53+01:00paynoappend a new title to settingshttps://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests/82rename some remaining `ref_titles` to `flat_titles`2021-12-06T09:42:18+01:00paynorename some remaining `ref_titles` to `flat_titles`0.7https://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests/57Add 3d xrd 22021-05-12T07:42:04+02:00paynoAdd 3d xrd 2Description / Goal
------------------
Include management of 3d-xrd dataset in nxtomomill.
TODO list
---------
- handle HDF5
- [x] add a `3DXRD` inheriting from BaseAcquisition for 3DXRD.
- [x] add a `3DXRDH5Config` or a `3DXRDCo...Description / Goal
------------------
Include management of 3d-xrd dataset in nxtomomill.
TODO list
---------
- handle HDF5
- [x] add a `3DXRD` inheriting from BaseAcquisition for 3DXRD.
- [x] add a `3DXRDH5Config` or a `3DXRDConfig`
- [ ] ~~add a Mock up class for 3D XRD~~
- [ ] ~~add unittest~~
- [x] add an application to handle it
- handle EDF
- [ ] ~~rework EDF converter ?~~
- [ ] ~~handle EDF to work with urls if necessary~~
- [ ] ~~create external storage for EDF~~
- [ ] ~~create virtual dataset from external storage for the `data` dataset~~
- [ ] ~~add an application to handle it~~
- [ ] ~~add deprecation warning for API modifications (settings, HDF5Config class...)~~
INFO (how to use...)
--------------------
some example of usage:
* without a configuration file
```
nxtomomill h5-3dxrd-2nx bassanite_Bassanite_start_1_4.h5 test_julia_no_cfg.nx --single-file
```
* with a configuration file
```
nxtomomill h5-3dxrd-2nx --config xrd_3d_config.cfg
```
an example of a configuration file: [xrd_3d_config.cfg](/uploads/18865262b5fbc13ff06e033f89311592/xrd_3d_config.cfg)
Any warning ?
-------------
associated materials (screenshot, test scripts...)
--------------------------------------------------0.6https://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests/56Draft: Add 3d xrd2021-04-29T08:48:09+02:00paynoDraft: Add 3d xrd- handle HDF5
- [ ] add a `3DXRD` inheriting from BaseAcquisition for 3DXRD.
- [ ] add a `3DXRDH5Config` or a `3DXRDConfig`
- [ ] add a Mock up class for 3D XRD
- [ ] add unittest
- [ ] add an application to handle it
- h...- handle HDF5
- [ ] add a `3DXRD` inheriting from BaseAcquisition for 3DXRD.
- [ ] add a `3DXRDH5Config` or a `3DXRDConfig`
- [ ] add a Mock up class for 3D XRD
- [ ] add unittest
- [ ] add an application to handle it
- handle EDF
- [ ] rework EDF converter ?
- [ ] handle EDF to work with urls if necessary
- [ ] create external storage for EDF
- [ ] create virtual dataset from external storage for the `data` dataset
- [ ] add an application to handle it0.6https://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests/18WIP: Update entry name2020-06-22T09:04:55+02:00paynoWIP: Update entry nameRoot node name will be updated from '1.1' to '1_1'. This PR aims to update code to manage both cases (see issue: https://gitlab.esrf.fr/bliss/bliss/-/issues/1776#note_76710)
Nxtomomill will still be compatible with all 'entry naming c...Root node name will be updated from '1.1' to '1_1'. This PR aims to update code to manage both cases (see issue: https://gitlab.esrf.fr/bliss/bliss/-/issues/1776#note_76710)
Nxtomomill will still be compatible with all 'entry naming convention'https://gitlab.esrf.fr/tomotools/nxtomomill/-/merge_requests/5[tomoedf2nx] remove overwritte of TO_IGNORE2020-03-31T11:02:34+02:00payno[tomoedf2nx] remove overwritte of TO_IGNORE