move from home made `Progress` to `tqdm`

Goal

Remove existing Progress class instances and replace them by the mainstream library https://tqdm.github.io/docs/tqdm

how to test it

The CI should already test the different functions with the progression. For 'manual test' on applications using progress the following can be done (if access to /data, /scisoft and /tmp_14_days is possible ):

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For h52nx

nxtomomill h52nx /data/projects/tomo-sample-data/training/part1_basic_reco/bambou_hercules_0001.h5 . --single-file

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For edf2nx

nxtomomill edf2nx /scisoft/tomo_data/5.06_crayon_W150_60_Al2_W0.25_xc1000_/ output_nxtomo.nx

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For fluo2nx

nxtomomill fluo2nx /tmp_14_days/payno/test_nxtomomill/fluo_datasets/ test_fluo.nx CP1_XRD_insitu_top_ft_100nm_projection

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For dxfile2nx

nxtomomill dxfile2nx /scisoft/tomo_data/dxfile/tomo_00068/tomo_00068.h5 output.nx

Note:

output layout, information... can be modified if it benefit to the user.