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tomotools
nxtomomill
Commits
47e80ccf
Commit
47e80ccf
authored
Nov 12, 2020
by
payno
Browse files
[add_dark_flat_nx_file] avoid loading the data to get dimensions
parent
55689af4
Pipeline
#37045
failed with stages
in 8 minutes and 28 seconds
Changes
1
Pipelines
1
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Inline
Side-by-side
nxtomomill/utils.py
View file @
47e80ccf
...
...
@@ -300,10 +300,19 @@ def add_dark_flat_nx_file(
n_frames_to_insert
=
1
if
isinstance
(
data
,
numpy
.
ndarray
)
and
data
.
ndim
==
3
:
n_frames_to_insert
=
data
.
shape
[
0
]
elif
isinstance
(
data
,
DataUrl
):
with
HDF5File
(
data
.
file_path
(),
mode
=
"r"
)
as
h5s
:
if
data
.
data_path
()
not
in
h5s
:
raise
KeyError
(
"Path given ({}) is not in {}"
.
format
(
data
.
data_path
(),
data
.
file_path
)
)
data_node
=
data
[
data_path
()]
if
data_node
.
ndim
is
3
:
n_frames_to_insert
=
data_node
.
shape
[
0
]
else
:
raw_data
=
get_data
(
data
)
if
raw_data
.
ndim
is
3
:
n_frames_to_insert
=
raw_data
.
shape
[
0
]
raise
TypeError
(
"{} as input is not managed"
.
format
(
type
(
data
)))
if
logger
is
not
None
:
logger
.
info
(
...
...
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